Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A05_e321_01.seq
         (1441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270...    33   0.73 
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916...    33   0.73 
10_02_0176 + 6215326-6215352,6216870-6217445                           29   9.1  

>05_04_0078 +
           17725931-17726057,17726128-17726305,17726942-17727023,
           17728500-17728676,17728763-17728930,17729028-17729219
          Length = 307

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 206 RRTATTSGVPPDIRIHTYIHELYRYIFTRAYN*QVNSLETSLLQNLHESFLCTGLL 373
           R+T +  G      I   IH L R+ ++ A N + N LE  +L NLH+     GL+
Sbjct: 173 RQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLI 228


>01_01_1151 +
           9165454-9165580,9165658-9165835,9167256-9167337,
           9167907-9168083,9168174-9168341,9168466-9168657
          Length = 307

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 206 RRTATTSGVPPDIRIHTYIHELYRYIFTRAYN*QVNSLETSLLQNLHESFLCTGLL 373
           R+T +  G      I   IH L R+ ++ A N + N LE  +L NLH+     GL+
Sbjct: 173 RQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLI 228


>10_02_0176 + 6215326-6215352,6216870-6217445
          Length = 200

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 310 YLLVVRARKYISIQFMYVCMYADIRWNPGSGRSASHRVH 194
           ++LV   R  +  ++ Y C Y D+ W+ G G  + H VH
Sbjct: 164 FILVTFLRNILFTRYTY-CSYEDVEWSSGGG--SCHGVH 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,869,169
Number of Sequences: 37544
Number of extensions: 375127
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4571230552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)