Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A05_e321_01.seq
         (1441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   8.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   8.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   8.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   8.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   8.6  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 495 NLRSDVLVTSFTLLNGYFR-LISSGVC 572
           N+  D ++ S  LLN YF+ L+  G C
Sbjct: 31  NINVDEILHSDRLLNNYFKCLMDEGRC 57


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 133 IIVPYLRPSPR*QPVVKVRVYVLYETHC 216
           ++  +LR   + QP      Y++YE+ C
Sbjct: 24  VLFSFLRTRTKLQPTYFHHTYIIYESLC 51


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 133 IIVPYLRPSPR*QPVVKVRVYVLYETHC 216
           ++  +LR   + QP      Y++YE+ C
Sbjct: 24  VLFSFLRTRTKLQPTYFHHTYIIYESLC 51


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 495 NLRSDVLVTSFTLLNGYFR-LISSGVC 572
           N+  D ++ S  LLN YF+ L+  G C
Sbjct: 31  NINVDEILHSDRLLNNYFKCLMDEGRC 57


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 495 NLRSDVLVTSFTLLNGYFR-LISSGVC 572
           N+  D ++ S  LLN YF+ L+  G C
Sbjct: 31  NINVDEILHSDRLLNNYFKCLMDEGRC 57


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 499 KLRVIQCKYQNTH*TLFIMILIHIK 425
           KL+V  C+Y  T   +F  +  HIK
Sbjct: 134 KLQVFDCRYVTTTSGMFEALCNHIK 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,478
Number of Sequences: 438
Number of extensions: 4977
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 50003250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)