Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A05_e321_01.seq
         (1441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein si...    29   5.7  
At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein si...    29   5.7  
At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein si...    29   5.7  

>At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 203 MRRTATTSGVP--PDIRIHTYIHELY 274
           ++R    SG P  PDI I+TYI+ELY
Sbjct: 293 IKRVLNNSGPPSQPDIPINTYIYELY 318


>At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 203 MRRTATTSGVP--PDIRIHTYIHELY 274
           ++R    SG P  PDI I+TYI+ELY
Sbjct: 293 IKRVLNNSGPPSQPDIPINTYIYELY 318


>At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 203 MRRTATTSGVP--PDIRIHTYIHELY 274
           ++R    SG P  PDI I+TYI+ELY
Sbjct: 293 IKRVLNNSGPPSQPDIPINTYIYELY 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,115
Number of Sequences: 28952
Number of extensions: 305771
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3807243840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)