Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A04_e313_02.seq
         (1509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    34   0.044
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    31   0.55 
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    29   1.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   2.2  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    28   3.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   5.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   5.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   6.7  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 34.3 bits (75), Expect = 0.044
 Identities = 39/154 (25%), Positives = 69/154 (44%)
 Frame = -3

Query: 535 LSSTGFKRSRSPIDTPPVQTSTSARDKAVAIPATSSSGVSRAIPQSILS*PCSLSKAFNI 356
           LSS+    S S   +    T TS+     +IP+TSSS  S +          SLS + + 
Sbjct: 210 LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTS---------SSLSSSSSS 260

Query: 355 VLFESRICAGRNLTSDGS*SSLPVDISATLGLT*AVMDR*PAPANTPILAASSISPLLTS 176
               S   +   ++S  S SS P   S+T+  + +      + ++T   ++SS S   ++
Sbjct: 261 STASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSST 320

Query: 175 IVPMGISKPTGRTS*PNCGAIRISTSNSVCLSSA 74
           +    +S  +  +S P   +  IS+S+S   SS+
Sbjct: 321 LSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSS 354



 Score = 30.7 bits (66), Expect = 0.55
 Identities = 41/166 (24%), Positives = 73/166 (43%)
 Frame = -3

Query: 532 SSTGFKRSRSPIDTPPVQTSTSARDKAVAIPATSSSGVSRAIPQSILS*PCSLSKAFNIV 353
           SST    S S   + P  +STS+   + A P ++SS  S     S++S   S S + +  
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS--SYLSSSSVVSSSSSPSSSSSST 229

Query: 352 LFESRICAGRNLTSDGS*SSLPVDISATLGLT*AVMDR*PAPANTPILAASSISPLLTSI 173
           L  S +      ++  S SS    +S++   + A      + +++ I+++SS S    + 
Sbjct: 230 LTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTAS----SSSSSSSIISSSSSSSSSPTS 285

Query: 172 VPMGISKPTGRTS*PNCGAIRISTSNSVCLSSASCRIXCSPGDXTS 35
               IS  +  +S P   +  IS+S+S   S +S     S    +S
Sbjct: 286 TSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -3

Query: 742 RNRGHAPSRPLHTRKPRITNNRQHTYADTGFPGKAKIYFVFPSNWHVANVLGL 584
           +NRG  P RP   R PR+    ++  A      K  IY   P   +     G+
Sbjct: 534 KNRGLTPRRPKENRNPRLKKRMRYEKAKKKLASKKAIYKGAPQGGYAGEQTGI 586


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 471 VLVCTGGVSMGERDLLKPVLLNDFGA 548
           VL+C GG ++  + L  P+L ND G+
Sbjct: 229 VLICKGGTNISLKTLYMPLLKNDLGS 254


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +3

Query: 357 MLKALLREHGYDSIDCGIARDTPEELVAGIATALSRA-DVLV-CTGGVSMGE--RDLLKP 524
           +LK+LL E     I  GI RDTP   + G    +S+A   LV C  G       ++ + P
Sbjct: 573 LLKSLLEE----IIHIGIVRDTPAPELKGYYFGMSKAVQALVECVAGTDWSSLPKEEMYP 628

Query: 525 VLLNDFGANLYYGRVR 572
            L  D    L   R R
Sbjct: 629 ALFRDMWFTLVINRFR 644


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 507 RDLLKPVLLNDFGANLY--YGRVRMKPGKPSTFATCQFEGKTKYIFALPGNPVSAYVCCL 680
           +DL    + N+F   +Y  + R+ ++ G    +  CQ +    Y F +PGN        +
Sbjct: 190 QDLTVQRIQNEFSVLVYEIHARIALEKGDVGEYNQCQTQLFHLYSFGIPGNTKEFLAYRI 249

Query: 681 LFVI 692
           L+++
Sbjct: 250 LYML 253


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 1/168 (0%)
 Frame = -3

Query: 535 LSSTGFKRSRSPIDTPPVQTSTSARDKAVAIPATSSSGVSRAIPQSILS*PCSLSKAFNI 356
           LSS     + S   TP    +++    A + P +S S  +     S  S P S   +   
Sbjct: 292 LSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTA 351

Query: 355 VLFESRICAGRNLTSDGS*SSLPVDISATLGLT*AVMDR*PAPANTPILAA-SSISPLLT 179
               S      N T+  S SS P+    +   T        + ++TP+ +A S+ S  ++
Sbjct: 352 TSASSTPLTSVNSTTATSASSTPLTSVNSTSAT--------SASSTPLTSANSTTSTSVS 403

Query: 178 SIVPMGISKPTGRTS*PNCGAIRISTSNSVCLSSASCRIXCSPGDXTS 35
           S  P   +     TS  +  +  +S++NS   +SAS     S    T+
Sbjct: 404 STAPSYNTSSVLPTS--SVSSTPLSSANSTTATSASSTPLSSVNSTTA 449


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = -3

Query: 547 APKSLSSTGFKRSRSPIDTPPVQTSTSARDKAVAIPATSSSGVSRAIPQSILS*PCSLSK 368
           +P S SS+  + S +   TP   TSTS    + +IP TS++  S     S      S S 
Sbjct: 606 SPNSTSSSSTQVSWNST-TPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSST 664

Query: 367 AFNIVLFESRICA-GRNLTSDGS*SSLP 287
           A +   F S   +   N+T+  S  S P
Sbjct: 665 ATSSTSFASESSSFYSNVTTSSSTVSTP 692


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 538 SLSSTGFKRSRSPIDTPPVQTS 473
           S+S  GF   +SP+ TPP+ T+
Sbjct: 718 SVSPVGFSFDKSPVTTPPLPTA 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,227,500
Number of Sequences: 5004
Number of extensions: 83929
Number of successful extensions: 272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 844406124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)