Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A04_e313_02.seq
         (1509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947...   150   2e-36
02_05_0496 - 29499959-29500653,29501039-29501093                       29   7.2  

>04_04_1465 +
           33794225-33794389,33794471-33794597,33794669-33794799,
           33795153-33795254,33795337-33795420,33795504-33795731,
           33795934-33796038,33796376-33796731,33797146-33797303,
           33797399-33797505,33797852-33798061
          Length = 590

 Score =  150 bits (364), Expect = 2e-36
 Identities = 83/192 (43%), Positives = 115/192 (59%), Gaps = 6/192 (3%)
 Frame = +3

Query: 102 VEILIAPQLGQDVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSITAQVNPKVALM 281
           V IL+ P  GQD+R VG DI   ++++   E +  A+IG+LA  G  ++     P +A+ 
Sbjct: 126 VRILVRPTQGQDIRNVGCDIQKDSVVLKSSEHIGPAEIGLLATVGVTTVKVYRRPTIAVF 185

Query: 282 STGNELQEPSEVKLRPAHIRDSNRTMLKALLREHGYDSIDCGIARDTPEELVAGIATALS 461
           STG+EL EP+   L    IRDSNR ML A   +H    +D GIA+DT E L   +  ALS
Sbjct: 186 STGDELVEPATASLSRGQIRDSNRAMLIAAAIQHKCKVVDLGIAKDTEESLKEHMDAALS 245

Query: 462 R-ADVLVCTGGVSMGERDLLKPVLLNDFGANLYYGRVRMKPGKPSTFATCQFEGKTK--- 629
             AD+++ +GGVSMG+RDL+KP L +     +++ ++RMKPGKP TFA    E  +K   
Sbjct: 246 SDADIILTSGGVSMGDRDLVKPCLAS--MGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSK 303

Query: 630 --YIFALPGNPV 659
               F LPGNPV
Sbjct: 304 KVLAFGLPGNPV 315



 Score = 29.1 bits (62), Expect = 9.6
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = +3

Query: 846 GNQCSSRLLSACGASVLLELPGRTXSTPQLXAGSVXTALLXSRLDHS 986
           G Q SSRLLS   A+ LLE+P        L AG+   A+L S +  S
Sbjct: 332 GQQASSRLLSMKSANALLEVP---LVGQMLEAGTSMQAILISDMTSS 375


>02_05_0496 - 29499959-29500653,29501039-29501093
          Length = 249

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 684 FVIRGLRVCNGREGAWPRLRVRLSHAVALDPRP 782
           FV + L  CNGRE  W     RL +A+A  P P
Sbjct: 9   FVSKALGKCNGRERGW--REERLDYAMAYPPGP 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,272,128
Number of Sequences: 37544
Number of extensions: 597698
Number of successful extensions: 1667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)