Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A04_e313_02.seq
         (1509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30068| Best HMM Match : MoeA_C (HMM E-Value=2.9e-15)                83   6e-16
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       31   2.4  
SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.5  
SB_12910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.7  

>SB_30068| Best HMM Match : MoeA_C (HMM E-Value=2.9e-15)
          Length = 158

 Score = 83.0 bits (196), Expect = 6e-16
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
 Frame = +3

Query: 639 ALPGNPVSAYVCCLLFVIRGLRVCNGREGAW-PRLRVRLSHAVALDPRPEYARAEIHLSD 815
           A  GNPVSA V   LFV+  LR   G +     +++ +L+ +V LDPRPEY RA +    
Sbjct: 45  ASTGNPVSAMVTFYLFVLPALRKLAGHQFPHLTKIKAKLAKSVRLDPRPEYHRAVLSWQP 104

Query: 816 TDELPTXKLIGNQCSSRLLSACGASVLLELPGRTXSTPQLXAGSVXTALL 965
            D +P  +  G+QCSSRLLS   A+ LL LP R+    ++ +GS+  AL+
Sbjct: 105 DDPIPVAQSTGSQCSSRLLSMRTANALLVLPPRSDELIEIGSGSIVDALI 154


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
 Frame = -3

Query: 754  DNRTRNRGHAPSRPLHTRKPRI--TNNRQHTYADTGFPGKAKIYFVFPSNWHVANVLGLP 581
            +N T + GH     +H  KPR+     R HT +      +    F FP    +A      
Sbjct: 713  NNDTDHNGHLILHSMHKYKPRVHLMRKRDHTASIVNLNSEEVKTFTFPETSFIAVTAYQN 772

Query: 580  GFIRTRP*YKFAPKSLSSTGFKRSRSPIDTPPVQTSTSARDKAVAIPATSSSGVSRAIPQ 401
              +R    Y    K+   +  +R +   +  PVQ   S+     +     SS V   +P+
Sbjct: 773  QLVREFANYDNPAKNRQQSIRQRVQRYNEDIPVQRECSSHSTGFSSTVIHSSPVYIPVPR 832

Query: 400  SI 395
             I
Sbjct: 833  II 834


>SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 544 PKSLSSTGFKRSRSPIDTPPVQTSTSARDKA 452
           P S  ST F RS+  + TPP  T  + R KA
Sbjct: 101 PSSSPSTPFARSKLALPTPPYSTPRTTRPKA 131


>SB_12910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -3

Query: 532 SSTGFKRSRSPIDTP----PVQTSTSARDKAVAIPATSSSGVSRAIPQSILS*PCSLSKA 365
           SSTG K + S  D+P       T+ +A   AV+I  TSSS VS     +  +   + + A
Sbjct: 102 SSTGQKTTPSAQDSPITAMTTATTVTASKSAVSISETSSSSVSNTTKSAATTTDIASTSA 161

Query: 364 FNIVL 350
             IV+
Sbjct: 162 VPIVI 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,178,121
Number of Sequences: 59808
Number of extensions: 686741
Number of successful extensions: 1734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4894653009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)