Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A04_e313_02.seq
(1509 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC030016-1|AAH30016.1| 769|Homo sapiens gephyrin protein. 260 7e-69
AJ272343-1|CAC10537.1| 769|Homo sapiens gephyrin protein. 260 7e-69
AJ272033-1|CAC81240.1| 736|Homo sapiens gephyrin protein. 260 7e-69
AF272663-1|AAF81785.1| 736|Homo sapiens gephyrin protein. 260 7e-69
AB037806-1|BAA92623.1| 768|Homo sapiens KIAA1385 protein protein. 260 7e-69
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 41 0.010
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 40 0.031
U78516-1|AAD03422.1| 1011|Homo sapiens cAMP-regulated guanine nu... 33 2.7
BC040183-1|AAH40183.1| 867|Homo sapiens RAPGEF4 protein protein. 33 2.7
AB209681-1|BAD92918.1| 643|Homo sapiens RAP guanine-nucleotide-... 33 2.7
AB027471-1|BAB72179.1| 1011|Homo sapiens cAMP-GEFII protein. 33 2.7
AB075513-1|BAE45759.1| 478|Homo sapiens putative protein produc... 33 3.6
>BC030016-1|AAH30016.1| 769|Homo sapiens gephyrin protein.
Length = 769
Score = 260 bits (638), Expect = 7e-69
Identities = 141/303 (46%), Positives = 187/303 (61%), Gaps = 1/303 (0%)
Frame = +3
Query: 72 EAEDKQTELEVEILIAPQLGQDVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSIT 251
E++D ELEV IL+ + GQD+RP+G DI G ++ KG + ++IG+LA G +
Sbjct: 468 ESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVE 527
Query: 252 AQVNPKVALMSTGNELQEPSEVKLRPAHIRDSNRTMLKALLREHGYDSIDCGIARDTPEE 431
P VA+MSTGNEL P + L P IRDSNR+ L A ++EHGY +I+ GI D P++
Sbjct: 528 VNKFPVVAVMSTGNELLNPED-DLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDD 586
Query: 432 LVAGIATALSRADVLVCTGGVSMGERDLLKPVLLNDFGANLYYGRVRMKPGKPSTFATCQ 611
L+ + +SRADV++ +GGVSMGE+D LK VL D A +++GRV MKPG P+TFAT
Sbjct: 587 LLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLD 646
Query: 612 FEGKTKYIFALPGNPVSAYVCCLLFVIRGLRVCNGREGAWPR-LRVRLSHAVALDPRPEY 788
+G K IFALPGNPVSA V C LFV+ LR G P ++ RLS V LDPRPEY
Sbjct: 647 IDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEY 706
Query: 789 ARAEIHLSDTDELPTXKLIGNQCSSRLLSACGASVLLELPGRTXSTPQLXAGSVXTALLX 968
R + + LP + GNQ SSRL+S A+ LL LP +T +L G V ++
Sbjct: 707 HRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVI 766
Query: 969 SRL 977
RL
Sbjct: 767 GRL 769
>AJ272343-1|CAC10537.1| 769|Homo sapiens gephyrin protein.
Length = 769
Score = 260 bits (638), Expect = 7e-69
Identities = 141/303 (46%), Positives = 187/303 (61%), Gaps = 1/303 (0%)
Frame = +3
Query: 72 EAEDKQTELEVEILIAPQLGQDVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSIT 251
E++D ELEV IL+ + GQD+RP+G DI G ++ KG + ++IG+LA G +
Sbjct: 468 ESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVE 527
Query: 252 AQVNPKVALMSTGNELQEPSEVKLRPAHIRDSNRTMLKALLREHGYDSIDCGIARDTPEE 431
P VA+MSTGNEL P + L P IRDSNR+ L A ++EHGY +I+ GI D P++
Sbjct: 528 VNKFPVVAVMSTGNELLNPED-DLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDD 586
Query: 432 LVAGIATALSRADVLVCTGGVSMGERDLLKPVLLNDFGANLYYGRVRMKPGKPSTFATCQ 611
L+ + +SRADV++ +GGVSMGE+D LK VL D A +++GRV MKPG P+TFAT
Sbjct: 587 LLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLD 646
Query: 612 FEGKTKYIFALPGNPVSAYVCCLLFVIRGLRVCNGREGAWPR-LRVRLSHAVALDPRPEY 788
+G K IFALPGNPVSA V C LFV+ LR G P ++ RLS V LDPRPEY
Sbjct: 647 IDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEY 706
Query: 789 ARAEIHLSDTDELPTXKLIGNQCSSRLLSACGASVLLELPGRTXSTPQLXAGSVXTALLX 968
R + + LP + GNQ SSRL+S A+ LL LP +T +L G V ++
Sbjct: 707 HRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVI 766
Query: 969 SRL 977
RL
Sbjct: 767 GRL 769
>AJ272033-1|CAC81240.1| 736|Homo sapiens gephyrin protein.
Length = 736
Score = 260 bits (638), Expect = 7e-69
Identities = 141/303 (46%), Positives = 187/303 (61%), Gaps = 1/303 (0%)
Frame = +3
Query: 72 EAEDKQTELEVEILIAPQLGQDVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSIT 251
E++D ELEV IL+ + GQD+RP+G DI G ++ KG + ++IG+LA G +
Sbjct: 435 ESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVE 494
Query: 252 AQVNPKVALMSTGNELQEPSEVKLRPAHIRDSNRTMLKALLREHGYDSIDCGIARDTPEE 431
P VA+MSTGNEL P + L P IRDSNR+ L A ++EHGY +I+ GI D P++
Sbjct: 495 VNKFPVVAVMSTGNELLNPED-DLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDD 553
Query: 432 LVAGIATALSRADVLVCTGGVSMGERDLLKPVLLNDFGANLYYGRVRMKPGKPSTFATCQ 611
L+ + +SRADV++ +GGVSMGE+D LK VL D A +++GRV MKPG P+TFAT
Sbjct: 554 LLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLD 613
Query: 612 FEGKTKYIFALPGNPVSAYVCCLLFVIRGLRVCNGREGAWPR-LRVRLSHAVALDPRPEY 788
+G K IFALPGNPVSA V C LFV+ LR G P ++ RLS V LDPRPEY
Sbjct: 614 IDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEY 673
Query: 789 ARAEIHLSDTDELPTXKLIGNQCSSRLLSACGASVLLELPGRTXSTPQLXAGSVXTALLX 968
R + + LP + GNQ SSRL+S A+ LL LP +T +L G V ++
Sbjct: 674 HRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVI 733
Query: 969 SRL 977
RL
Sbjct: 734 GRL 736
>AF272663-1|AAF81785.1| 736|Homo sapiens gephyrin protein.
Length = 736
Score = 260 bits (638), Expect = 7e-69
Identities = 141/303 (46%), Positives = 187/303 (61%), Gaps = 1/303 (0%)
Frame = +3
Query: 72 EAEDKQTELEVEILIAPQLGQDVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSIT 251
E++D ELEV IL+ + GQD+RP+G DI G ++ KG + ++IG+LA G +
Sbjct: 435 ESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVE 494
Query: 252 AQVNPKVALMSTGNELQEPSEVKLRPAHIRDSNRTMLKALLREHGYDSIDCGIARDTPEE 431
P VA+MSTGNEL P + L P IRDSNR+ L A ++EHGY +I+ GI D P++
Sbjct: 495 VNKFPVVAVMSTGNELLNPED-DLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDD 553
Query: 432 LVAGIATALSRADVLVCTGGVSMGERDLLKPVLLNDFGANLYYGRVRMKPGKPSTFATCQ 611
L+ + +SRADV++ +GGVSMGE+D LK VL D A +++GRV MKPG P+TFAT
Sbjct: 554 LLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLD 613
Query: 612 FEGKTKYIFALPGNPVSAYVCCLLFVIRGLRVCNGREGAWPR-LRVRLSHAVALDPRPEY 788
+G K IFALPGNPVSA V C LFV+ LR G P ++ RLS V LDPRPEY
Sbjct: 614 IDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEY 673
Query: 789 ARAEIHLSDTDELPTXKLIGNQCSSRLLSACGASVLLELPGRTXSTPQLXAGSVXTALLX 968
R + + LP + GNQ SSRL+S A+ LL LP +T +L G V ++
Sbjct: 674 HRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVI 733
Query: 969 SRL 977
RL
Sbjct: 734 GRL 736
>AB037806-1|BAA92623.1| 768|Homo sapiens KIAA1385 protein protein.
Length = 768
Score = 260 bits (638), Expect = 7e-69
Identities = 141/303 (46%), Positives = 187/303 (61%), Gaps = 1/303 (0%)
Frame = +3
Query: 72 EAEDKQTELEVEILIAPQLGQDVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSIT 251
E++D ELEV IL+ + GQD+RP+G DI G ++ KG + ++IG+LA G +
Sbjct: 467 ESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVE 526
Query: 252 AQVNPKVALMSTGNELQEPSEVKLRPAHIRDSNRTMLKALLREHGYDSIDCGIARDTPEE 431
P VA+MSTGNEL P + L P IRDSNR+ L A ++EHGY +I+ GI D P++
Sbjct: 527 VNKFPVVAVMSTGNELLNPED-DLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDD 585
Query: 432 LVAGIATALSRADVLVCTGGVSMGERDLLKPVLLNDFGANLYYGRVRMKPGKPSTFATCQ 611
L+ + +SRADV++ +GGVSMGE+D LK VL D A +++GRV MKPG P+TFAT
Sbjct: 586 LLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLD 645
Query: 612 FEGKTKYIFALPGNPVSAYVCCLLFVIRGLRVCNGREGAWPR-LRVRLSHAVALDPRPEY 788
+G K IFALPGNPVSA V C LFV+ LR G P ++ RLS V LDPRPEY
Sbjct: 646 IDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEY 705
Query: 789 ARAEIHLSDTDELPTXKLIGNQCSSRLLSACGASVLLELPGRTXSTPQLXAGSVXTALLX 968
R + + LP + GNQ SSRL+S A+ LL LP +T +L G V ++
Sbjct: 706 HRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVI 765
Query: 969 SRL 977
RL
Sbjct: 766 GRL 768
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 41.1 bits (92), Expect = 0.010
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 2/168 (1%)
Frame = -3
Query: 547 APKSLSSTGFKRSRSPIDTPPVQTSTSARDKAVAIPATSSSGVSRAIPQSILS*PCSLSK 368
+P S SST S S + +S S+ + + P++SSS S + P S S P S S
Sbjct: 82 SPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSS-SSSSPSSSSSSPSSSSS 140
Query: 367 AFNIVLFESRICAGRNLTSDGS*SSLPVDIS-ATLGLT*AVMDR*P-APANTPILAASSI 194
+ + S + +S S SS P S ++ G + + + P + +++P ++SS
Sbjct: 141 SSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSP 200
Query: 193 SPLLTSIVPMGISKPTGRTS*PNCGAIRISTSNSVCLSSASCRIXCSP 50
SP +S S + TS P+ + S+ +S C S+A R SP
Sbjct: 201 SPRSSSPSSSSSSTSSPSTSSPSSSSPSSSSPSSSCPSAALGRRPQSP 248
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 39.5 bits (88), Expect = 0.031
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 2/168 (1%)
Frame = -3
Query: 547 APKSLSSTGFKRSRSPIDTPPVQTSTSARDKAVAIPATSSSGVSRAIPQSILS*PCSLSK 368
+P S SST S S + +S+++ + + +SSS S + P S S P S S
Sbjct: 82 SPSSSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSS 141
Query: 367 AFNIVLFESRICAGRNLTSDGS*SSLPVDIS-ATLGLT*AVMDR*P-APANTPILAASSI 194
+ + S + +S S SS P S ++ G + + + P + +++P ++SS
Sbjct: 142 SSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSP 201
Query: 193 SPLLTSIVPMGISKPTGRTS*PNCGAIRISTSNSVCLSSASCRIXCSP 50
SP +S S + TS P+ + S+ +S C S+A R SP
Sbjct: 202 SPRSSSPSSSSSSTSSPSTSSPSSSSPSSSSPSSSCPSAALGRRPQSP 249
>U78516-1|AAD03422.1| 1011|Homo sapiens cAMP-regulated guanine
nucleotide exchange factor II protein.
Length = 1011
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +3
Query: 336 IRDSNRTMLKALLREHGYDSIDCGIARDTPEELVAGIATALSRADVLVCTGGVSMGERDL 515
IR S+ + K +H Y +I +A +E+++ +A L + L+ S GE+ +
Sbjct: 664 IRGSDEVLFKVYCMDHTYTTIRVPVATSV-KEVISAVADKLGSGEGLIIVKMSSGGEKVV 722
Query: 516 LKPVLLNDFGANLYYGRV 569
LKP ++ F GR+
Sbjct: 723 LKPNDVSVFTTLTINGRL 740
>BC040183-1|AAH40183.1| 867|Homo sapiens RAPGEF4 protein protein.
Length = 867
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +3
Query: 336 IRDSNRTMLKALLREHGYDSIDCGIARDTPEELVAGIATALSRADVLVCTGGVSMGERDL 515
IR S+ + K +H Y +I +A +E+++ +A L + L+ S GE+ +
Sbjct: 520 IRGSDEVLFKVYCMDHTYTTIRVPVATSV-KEVISAVADKLGSGEGLIIVKMSSGGEKVV 578
Query: 516 LKPVLLNDFGANLYYGRV 569
LKP ++ F GR+
Sbjct: 579 LKPNDVSVFTTLTINGRL 596
>AB209681-1|BAD92918.1| 643|Homo sapiens RAP
guanine-nucleotide-exchange factor 4 variant protein.
Length = 643
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +3
Query: 336 IRDSNRTMLKALLREHGYDSIDCGIARDTPEELVAGIATALSRADVLVCTGGVSMGERDL 515
IR S+ + K +H Y +I +A +E+++ +A L + L+ S GE+ +
Sbjct: 296 IRGSDEVLFKVYCMDHTYTTIRVPVATSV-KEVISAVADKLGSGEGLIIVKMSSGGEKVV 354
Query: 516 LKPVLLNDFGANLYYGRV 569
LKP ++ F GR+
Sbjct: 355 LKPNDVSVFTTLTINGRL 372
>AB027471-1|BAB72179.1| 1011|Homo sapiens cAMP-GEFII protein.
Length = 1011
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +3
Query: 336 IRDSNRTMLKALLREHGYDSIDCGIARDTPEELVAGIATALSRADVLVCTGGVSMGERDL 515
IR S+ + K +H Y +I +A +E+++ +A L + L+ S GE+ +
Sbjct: 664 IRGSDEVLFKVYCMDHTYTTIRVPVATSV-KEVISAVADKLGSGEGLIIVKMSSGGEKVV 722
Query: 516 LKPVLLNDFGANLYYGRV 569
LKP ++ F GR+
Sbjct: 723 LKPNDVSVFTTLTINGRL 740
>AB075513-1|BAE45759.1| 478|Homo sapiens putative protein product
of Nbla00496 protein.
Length = 478
Score = 32.7 bits (71), Expect = 3.6
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +3
Query: 336 IRDSNRTMLKALLREHGYDSIDCGIARDTPEELVAGIATALSRADVLVCTGGVSMGERDL 515
IR S+ + K +H Y +I +A +E+++ +A L + L+ S GE+ +
Sbjct: 131 IRGSDEVLFKVYCMDHTYTTIRVPVATSV-KEVISAVADKLGSGEGLIIVKMSSGGEKVV 189
Query: 516 LKP 524
LKP
Sbjct: 190 LKP 192
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,684,052
Number of Sequences: 237096
Number of extensions: 3264787
Number of successful extensions: 6864
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6847
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22416935806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -