Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A04_e313_02.seq
         (1509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein...   194   2e-49
At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:209756...    29   8.0  

>At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein /
            molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)
            identical to SP|Q39054 Molybdopterin biosynthesis CNX1
            protein (Molybdenum cofactor biosynthesis enzyme CNX1)
            {Arabidopsis thaliana}
          Length = 670

 Score =  194 bits (472), Expect = 2e-49
 Identities = 132/311 (42%), Positives = 177/311 (56%), Gaps = 14/311 (4%)
 Frame = +3

Query: 81   DKQTELE-VEILIAPQLGQDVRPVGFDIPMGTILVNKGEILDAAKIGVLAGAGYRSITAQ 257
            D  TE + V+ILI  + G D+R VG DI     ++  GE + A++IG+LA AG   +   
Sbjct: 129  DVSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIGLLATAGVTMVKVY 188

Query: 258  VNPKVALMSTGNELQEPSEVKLRPAHIRDSNRTMLKALLREHGYDSIDCGIARDTPEELV 437
              P VA++STG+EL EP+   L    IRDSNR ML A + +     +D GI RD  +EL 
Sbjct: 189  PMPIVAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELE 248

Query: 438  AGIATALSR-ADVLVCTGGVSMGERDLLKPVLLNDFGANLYYGRVRMKPGKPSTFA---- 602
              +  A+S   D+++ +GGVSMG+RD +KP LL + G  +Y+ +V MKPGKP TFA    
Sbjct: 249  KVLDEAVSSGVDIILTSGGVSMGDRDFVKP-LLEEKG-KVYFSKVLMKPGKPLTFAEIRA 306

Query: 603  --TCQFEGKTKYIFALPGNPVSAYVCCLLFVIRGLRVCNGREGAWP-RLRVRLSHAVALD 773
              T    GKT   F LPGNPVS  VC  +FV+  +R   G     P R+R+RL   +  D
Sbjct: 307  KPTESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAGWTSPHPLRVRLRLQEPIKSD 366

Query: 774  P-RPEYARAEIHLSDTDELPTXKLI----GNQCSSRLLSACGASVLLELPGRTXSTPQLX 938
            P RPE+ RA I   D D   T   +    G+Q SSRLLS   A+ LLELP  T +   L 
Sbjct: 367  PIRPEFHRAIIKWKDNDGSGTPGFVAESTGHQMSSRLLSMRSANALLELPA-TGNV--LS 423

Query: 939  AGSVXTALLXS 971
            AGS  +A++ S
Sbjct: 424  AGSSVSAIIVS 434


>At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:20975609)
           [Arabidopsis thaliana]
          Length = 280

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 628 FVFPSNWHVANVLGLPGFIRTRP*YKFAPKSL 533
           F+F S+ H+ ++ GLP ++ TR  YK  P ++
Sbjct: 49  FLFISHSHMDHIGGLPMYVATRGLYKMKPPTI 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,564,153
Number of Sequences: 28952
Number of extensions: 451258
Number of successful extensions: 1203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)