Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A03_e305_01.seq
(1481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 43 6e-04
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 40 0.004
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 40 0.004
At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein ... 38 0.017
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 36 0.051
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 36 0.051
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ... 36 0.051
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ... 33 0.36
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ... 33 0.36
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 33 0.36
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 33 0.48
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 33 0.48
At4g08460.2 68417.m01397 expressed protein 32 0.84
At4g08460.1 68417.m01396 expressed protein 32 0.84
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 32 1.1
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 31 1.5
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 31 1.5
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 31 1.5
At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein ... 31 1.9
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 31 1.9
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r... 31 2.6
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 31 2.6
At3g59610.1 68416.m06651 F-box family protein / jacalin lectin f... 30 3.4
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 30 3.4
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 30 3.4
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 30 4.5
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 30 4.5
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 30 4.5
At2g01620.1 68415.m00088 expressed protein 30 4.5
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 30 4.5
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 29 5.9
At5g46710.1 68418.m05755 zinc-binding family protein similar zin... 29 5.9
At2g37420.1 68415.m04589 kinesin motor protein-related 29 5.9
At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein ... 29 5.9
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 29 5.9
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ... 29 5.9
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 29 7.8
At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein ... 29 7.8
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ... 29 7.8
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 29 7.8
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2... 29 7.8
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 29 7.8
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam... 29 7.8
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 29 7.8
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 42.7 bits (96), Expect = 6e-04
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +3
Query: 195 CIECETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHSFNMNTHP 374
C C+ F +++ L +H + KH F +CH+CHK+ +A IH+ +H N+ P
Sbjct: 14 CYYCDREFDDEKILVQHQKAKH-----F-KCHVCHKKLSTASGMVIHVLQVHKENVTKVP 67
Query: 375 CG-----LCTISFSSNEALTIHLQTKHLAEDE 455
I + + H+ T H E+E
Sbjct: 68 NAKDGRDSTDIEIYGMQGIPPHVLTAHYGEEE 99
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +3
Query: 186 RYKCIECETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKL---LHSF 356
R++C+ C +F + L +H++ + +S+ P C +C K +S +S + HL + L
Sbjct: 16 RHRCVACYKMFNRREHLVEHMKISY-HSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKG 74
Query: 357 N----MNTHPCGLCTISFSSNEALTIHLQTKHLA 446
N C LC F AL H HL+
Sbjct: 75 NCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLS 108
Score = 29.5 bits (63), Expect = 5.9
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +3
Query: 369 HPCGLCTISFSSNEALTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQH-NEQCHVNLLP 545
H C C F+ E L H++ + + + +C C K E+ +H N H++
Sbjct: 17 HRCVACYKMFNRREHLVEHMKISYHSLHQP-RCGVCLKHCKSFESVREHLNVPDHLSK-G 74
Query: 546 NIKQKVLPR-CILCMKDFSTRKTLKRHIKKFH 638
N K R C LC++ F L H K H
Sbjct: 75 NCKAIFTKRGCTLCLQIFEEAFALAEHKNKCH 106
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +3
Query: 186 RYKCIECETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKL---LHSF 356
R++C+ C +F + L +H++ + +S+ P C +C K +S +S + HL + L
Sbjct: 16 RHRCVACYKMFNRREHLVEHMKISY-HSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKG 74
Query: 357 N----MNTHPCGLCTISFSSNEALTIHLQTKHLA 446
N C LC F AL H HL+
Sbjct: 75 NCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLS 108
Score = 29.5 bits (63), Expect = 5.9
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +3
Query: 369 HPCGLCTISFSSNEALTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQH-NEQCHVNLLP 545
H C C F+ E L H++ + + + +C C K E+ +H N H++
Sbjct: 17 HRCVACYKMFNRREHLVEHMKISYHSLHQP-RCGVCLKHCKSFESVREHLNVPDHLSK-G 74
Query: 546 NIKQKVLPR-CILCMKDFSTRKTLKRHIKKFH 638
N K R C LC++ F L H K H
Sbjct: 75 NCKAIFTKRGCTLCLQIFEEAFALAEHKNKCH 106
>At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 395
Score = 37.9 bits (84), Expect = 0.017
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +3
Query: 285 CHICHKRFESAKSCKIHLKL-LHSFNMNTHPCGLCTIS---FSSNEALTIHLQTKHLAED 452
C+ C+K FE K H K H +N+ G+ ++ F + +A + K +
Sbjct: 6 CNSCNKDFEDDAEQKFHYKSEWHRYNLKRKIAGVPGVTEALFEARQAAIAQEKVKAVEAP 65
Query: 453 EIYKCEECNLVFKGQENFEQH-NEQCHV 533
+Y C CN ++ + EQH + HV
Sbjct: 66 MLYSCGICNKGYRSSKAHEQHLKSKSHV 93
Score = 32.3 bits (70), Expect = 0.84
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 108 CDYCDKQFKSKRNIRRHI--EYTHLGMKRYKCIE---CETLFKEKRSLRKHVRTKHPNSV 272
C+ C+K F+ + H E+ +KR E LF+ +++ + K +
Sbjct: 6 CNSCNKDFEDDAEQKFHYKSEWHRYNLKRKIAGVPGVTEALFEARQAAIAQEKVKAVEAP 65
Query: 273 LFPECHICHKRFESAKSCKIHLK 341
+ C IC+K + S+K+ + HLK
Sbjct: 66 MLYSCGICNKGYRSSKAHEQHLK 88
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 36.3 bits (80), Expect = 0.051
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +3
Query: 186 RYKCIECETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHL 338
R KC C F +K L +H+R + +SV P C IC+K S S + HL
Sbjct: 5 RNKCGGCYRQFNKKEHLVEHMRISY-HSVHEPTCGICNKHCRSFDSLREHL 54
Score = 33.1 bits (72), Expect = 0.48
Identities = 23/86 (26%), Positives = 37/86 (43%)
Frame = +3
Query: 102 SKCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKHPNSVLFP 281
+KC C +QF K ++ H+ ++ + C C + SLR+H+ P
Sbjct: 6 NKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQ---- 61
Query: 282 ECHICHKRFESAKSCKIHLKLLHSFN 359
EC K S + C+ L +L S N
Sbjct: 62 EC----KNIFSIRGCRFCLTILESPN 83
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 36.3 bits (80), Expect = 0.051
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 84 HNNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKH 245
H W KCD C K++ + + + H + G K Y+C +C TLF + S H
Sbjct: 171 HGEKKW-KCDKCSKKYAVQSDCKAHSK--TCGTKEYRC-DCGTLFSRRDSFITH 220
>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 907
Score = 36.3 bits (80), Expect = 0.051
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Frame = +3
Query: 150 RRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKHPNS----VLFPECHICHKRFESA 317
R H+++ M +CI C + F +K L HV+ HP+ + EC++ + F
Sbjct: 518 RHHVQFAEKCML-LQCIPCGSHFGDKEQLLVHVQAVHPSECKSLTVASECNLTNGEFSQK 576
Query: 318 KSCKIHLKLLHSFNMNT---HP--CGLCTISFSSNEALTIHLQTKHL 443
++ N NT H C C + F+ L H Q +H+
Sbjct: 577 PEAGSSQIVVSQNNENTSGVHKFVCKFCGLKFNLLPDLGRHHQAEHM 623
>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 405
Score = 33.5 bits (73), Expect = 0.36
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +3
Query: 108 CDYCDKQFKSK--RNIRRHIEYTHLGMKRYKCIE---CETLFKEKRSLRKHVRTKHPNSV 272
C+ C+ +FK + RN+ ++ +KR E LF+ ++S + K +
Sbjct: 6 CNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTEALFEARQSALAQEKNKSNEAP 65
Query: 273 LFPECHICHKRFESAKSCKIHLK 341
+ C IC K + S+K+ + HL+
Sbjct: 66 MLYTCAICAKGYRSSKAHEQHLQ 88
>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 404
Score = 33.5 bits (73), Expect = 0.36
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +3
Query: 108 CDYCDKQFKSK--RNIRRHIEYTHLGMKRYKCIE---CETLFKEKRSLRKHVRTKHPNSV 272
C+ C+ +FK + RN+ ++ +KR E LF+ ++S + K +
Sbjct: 6 CNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTEALFEARQSALAQEKNKSNEAP 65
Query: 273 LFPECHICHKRFESAKSCKIHLK 341
+ C IC K + S+K+ + HL+
Sbjct: 66 MLYTCAICAKGYRSSKAHEQHLQ 88
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 33.5 bits (73), Expect = 0.36
Identities = 20/92 (21%), Positives = 37/92 (40%)
Frame = +3
Query: 363 NTHPCGLCTISFSSNEALTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQHNEQCHVNLL 542
+ H C C F L H+Q+ L ++C ++ +++ +H L
Sbjct: 64 SNHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLF 123
Query: 543 PNIKQKVLPRCILCMKDFSTRKTLKRHIKKFH 638
K+ C +FS + + RH+KK+H
Sbjct: 124 KCPKEN-------CKSEFSVQGNVGRHVKKYH 148
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 108 CDYC-DKQFKS--KRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKH 260
C+ C K K KR++R H E + G + + C + F + +L+KH++ H
Sbjct: 277 CEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 330
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 33.1 bits (72), Expect = 0.48
Identities = 26/70 (37%), Positives = 35/70 (50%)
Frame = +3
Query: 108 CDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKHPNSVLFPEC 287
C C K F K + R H + + G K + C C + FK KRSL+ HV+ V P C
Sbjct: 342 CRRCGKAFAVKGDWRTHEK--NCG-KLWYC-SCGSDFKHKRSLKDHVKAFGNGHV--PCC 395
Query: 288 HICHKRFESA 317
I H+ E+A
Sbjct: 396 GIDHEEEEAA 405
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 33.1 bits (72), Expect = 0.48
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 8/152 (5%)
Frame = +3
Query: 408 EALTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQHNEQCHVN---LLPNIKQKVLPRCI 578
EA + L + L E + Y CE CN F+ +N + H + V L ++V R
Sbjct: 53 EAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETNEEVRKRVY 112
Query: 579 LCMKDFSTRKTLKRHIKKFHDCFEVDELANFGS--RRRIFNVE---CDQCMKNFNGDLHY 743
+C T H + C + +L RR+ N + C++C K + Y
Sbjct: 113 VC-----PEPTCLHH----NPCHALGDLVGIKKHFRRKHSNHKQWICERCSKGYAVQSDY 163
Query: 744 NKYIKQKHLRDSIIFKCETCGSSYNSLEYSIQ 839
++K R C+ CG ++ +E I+
Sbjct: 164 KAHLKTCGTRG---HSCD-CGRVFSRVESFIE 191
>At4g08460.2 68417.m01397 expressed protein
Length = 274
Score = 32.3 bits (70), Expect = 0.84
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 108 CDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEK-RSLRKHVRTKHPNS 269
C C Q K + + +Y L K+ C+ E LF R L+KHV+ HP +
Sbjct: 107 CPLCRGQVKGWTVVEKERKY--LNSKKRSCMNDECLFYGSYRQLKKHVKENHPRA 159
>At4g08460.1 68417.m01396 expressed protein
Length = 274
Score = 32.3 bits (70), Expect = 0.84
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 108 CDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEK-RSLRKHVRTKHPNS 269
C C Q K + + +Y L K+ C+ E LF R L+KHV+ HP +
Sbjct: 107 CPLCRGQVKGWTVVEKERKY--LNSKKRSCMNDECLFYGSYRQLKKHVKENHPRA 159
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 31.9 bits (69), Expect = 1.1
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = +3
Query: 102 SKCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHV-----RTKHPN 266
+KC C +QF ++ H++ ++ C C+ + SLR+H+ + + N
Sbjct: 15 NKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHLIGPLPKQECKN 74
Query: 267 SVLFPECHICHKRFESAKSCKIH 335
C C ES S +IH
Sbjct: 75 IFSLRGCRFCMTILESPNSRRIH 97
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 186 RYKCIECETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHL 338
R KC C F + L +H++ + +S P C +C K S +S + HL
Sbjct: 14 RNKCAACYRQFNKLEHLVEHMKISY-HSGHEPTCGVCKKHCRSFESLREHL 63
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 31.5 bits (68), Expect = 1.5
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Frame = +3
Query: 168 THLGMKRYKCIECETL--FKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLK 341
T ++ + I CE FKE L K N EC IC E C H+K
Sbjct: 1684 TRCHLEYHPLITCERYKKFKENPDLSLKDWAKGKN---VKECPICKSTIEKTDGCN-HMK 1739
Query: 342 LLHSFNMNTHPCGLCTISFSSNEALTIHLQTKH 440
H C C F+ E HL+T H
Sbjct: 1740 C----RCGKHICWTCLDVFTQEEPCYAHLRTIH 1768
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 216 FKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHS 353
+++ R + ++V +++ C KRF SA+ CK HL+ +H+
Sbjct: 221 YRDGRDVLENVLASARKDMIWTFWMCCSKRFSSAEECKNHLEEVHA 266
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 31.5 bits (68), Expect = 1.5
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 54 QXIRHEVKIVHNNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRS 233
+ ++ K H + +S C C K K + R H + + G KR+ C+ C + FK KRS
Sbjct: 214 RTLQTHYKRKHGHKPFS-CRLCGKLLAVKGDWRTHEK--NCG-KRWVCV-CGSDFKHKRS 268
Query: 234 LRKHVR 251
L+ HV+
Sbjct: 269 LKDHVK 274
>At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 31.1 bits (67), Expect = 1.9
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 180 MKRYKCIECETLFKEKRSLRKHVRTKHPN-SVLFPECHICHKRFE-SAKSCKIHLKLLHS 353
++R++C C+ +F ++L H R H N F ++ S S H + +
Sbjct: 159 IERFECGGCKKVFGSHQALGGH-RASHKNVKGCFAITNVTDDPMTVSTSSGHDHQGKILT 217
Query: 354 FNMNTHPCGLCTISFSSNEALTIHLQTKHLAEDE 455
F+ + H C +C FSS +AL H++ E+E
Sbjct: 218 FSGH-HKCNICFRVFSSGQALGGHMRCHWEKEEE 250
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 31.1 bits (67), Expect = 1.9
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 9/153 (5%)
Frame = +3
Query: 408 EALTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQHNEQCHV--NLLPNIK--QKVLPRC 575
+A + L + L E + Y CE CN F+ +N + H + V LL K ++V R
Sbjct: 22 DAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDKKDEEVRKRV 81
Query: 576 ILCMKDFSTRKTLKRHIKKFHDCFEVDELANFGSR-RRIFNVE----CDQCMKNFNGDLH 740
+C T H C + +L RR +V C++C K +
Sbjct: 82 YVC-----PEPTCLHH----DPCHALGDLVGIKKHFRRKHSVHKQWVCERCSKGYAVQSD 132
Query: 741 YNKYIKQKHLRDSIIFKCETCGSSYNSLEYSIQ 839
Y ++K R C+ CG ++ +E I+
Sbjct: 133 YKAHLKTCGSRG---HSCD-CGRVFSRVESFIE 161
>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1094
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 216 FKEKRSLRKHVRT--KHPNSVLFPECH-ICHKRFESAKSCKIHLKLLHS 353
+KE+R + + V T K F C +C ++F SA+ CK HL+ H+
Sbjct: 229 YKEEREVLEKVLTSAKEDREWKFWICRTLCSRKFSSAEECKNHLEQQHA 277
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 30.7 bits (66), Expect = 2.6
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 3/139 (2%)
Frame = +3
Query: 108 CDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEK--RSLRKHVRTKHPNSVLFP 281
C C K FK N+R H+ K + + T +K SL+KH + + +
Sbjct: 219 CQICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKKGGYSLKKHYYSCPQHGCRWN 278
Query: 282 ECHICHKRFESAKSCKIHLKLLHSFNMNTHPCGLCTIS-FSSNEALTIHLQTKHLAEDEI 458
+ H + +S K H K H M + C C++ FS L H KH D
Sbjct: 279 QRHEKFQPLKSVICAKNHYKRSHCPKM--YMCRRCSVKHFSVLSDLRTH--EKHCG-DIK 333
Query: 459 YKCEECNLVFKGQENFEQH 515
+ C C F ++ H
Sbjct: 334 WVC-SCGTKFSRKDKLMSH 351
>At3g59610.1 68416.m06651 F-box family protein / jacalin lectin
family protein contains Pfam profile PF01419:
Jacalin-like lectin domain
Length = 521
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +3
Query: 120 DKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKHPNSVLFPECHIC 296
D + + I H+ L R C TLFKE+R + P +L E IC
Sbjct: 7 DLPYDLEGEILSHLPIQILARFRCVCKRWNTLFKERRFFNSDLGLARPQFILLAESKIC 65
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 30.3 bits (65), Expect = 3.4
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 378 GLCTISFSSNEALTIHLQTKHLAEDEIYKCEEC--NLVFKGQENFEQHNEQCHVNLLPNI 551
G+ T+ F S I ++ + A +IYKCE+C + +K + ++ N C V+
Sbjct: 55 GVHTVKFKSELERNITIKLGY-ANAKIYKCEKCPRPVAYKSFGSGKEDNPSCDVSGHEKY 113
Query: 552 KQKVL 566
K K+L
Sbjct: 114 KMKLL 118
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 216 FKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHS 353
+++ R + + + +++ C KRF SA+ CK HL+ +H+
Sbjct: 221 YRDGRDVLEKILASARKDMIWTFWMCCSKRFSSAEECKNHLEEVHA 266
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 29.9 bits (64), Expect = 4.5
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +3
Query: 204 CETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHSFNMNTHPCGL 383
C+ F+ K L+ H R + + C K+F + K +H ++ H + C
Sbjct: 1222 CKMTFESKAKLQTHKRNRCTHEG-------CGKKFRAHKYLVLHQRV-HK-DERPFECSW 1272
Query: 384 --CTISFSSNEALTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQHNEQ 524
C+++F A T HL+ I K + C L F+ ++ +H +
Sbjct: 1273 KGCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSFRFVSDYSRHRRK 1321
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 477 NLVFKGQENFEQHNEQCHVNLLPNIKQKVLPRCILCMK-DFSTRKTLKRHIKKFHDCFEV 653
NL + + E E +++ N+++ L RC ++ S K I H C +
Sbjct: 671 NLKWMDLSDSEDLKELPNLSTATNLEELKLRRCSSLVELPSSIEKLTSLQILDLHSCSSL 730
Query: 654 DELANFGSRRRIFNVECDQC 713
EL +FG+ ++ ++ + C
Sbjct: 731 VELPSFGNATKLEKLDLENC 750
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 29.9 bits (64), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 408 EALTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQHNEQ 524
+A + L + L E + Y CE CN F+ +N + H +
Sbjct: 50 DAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRR 88
>At2g01620.1 68415.m00088 expressed protein
Length = 292
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 456 IYKCEECNLVFKGQENFEQHNEQCHVNLLPNIKQKVLPRCILCMKDFSTRKTLKRH 623
I +C EC + G + Q + ++L VLP+C C K + T + +RH
Sbjct: 204 IPRCAECAVCLVGSDTESQEAACGNDDVLCLECWLVLPKCRFCNKPYCTNHSSRRH 259
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 108 CDYC-DKQFKS--KRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKH 260
C+ C K K KR++R H E + G + + C + F + +L+KH++ H
Sbjct: 189 CEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 242
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 171 HLGMKRYKCIECETLFKEKRSLRKHVRTKHPN 266
H+ + +KC C+ F +++ L KH T+H N
Sbjct: 99 HVDVFEWKCGYCKKSFNDEKFLDKHFSTRHYN 130
>At5g46710.1 68418.m05755 zinc-binding family protein similar
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 226
Score = 29.5 bits (63), Expect = 5.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +3
Query: 573 CILCMKDFSTRKTLKRHIKKFHDCFEVDELANF 671
C LC+ + +T++ I +H+ +VDE+ +
Sbjct: 67 CSLCLSEHENHRTIQIRISSYHNVTKVDEIQKY 99
>At2g37420.1 68415.m04589 kinesin motor protein-related
Length = 1039
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 414 LTIHLQTKHLAEDEIYKCEECNLV-FKGQEN 503
+T+H++ + + ++E+ KC + NLV G EN
Sbjct: 272 ITVHIKEESMGDEELIKCGKLNLVDLAGSEN 302
>At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 286
Score = 29.5 bits (63), Expect = 5.9
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +3
Query: 369 HPCGLCTISFSSNEALTIHLQTKHLA---EDEIYKCEECNLVFKGQENFE--QHNEQCHV 533
H C +C FSS +A H++ + + ++ K ++ L K + + ++ +
Sbjct: 49 HFCVICEKQFSSGKAYGGHVRIHSIEYNNKGKMKKMKKMKLKKKKKRKIGLVKKEKEKEI 108
Query: 534 NLL-PNIKQKVLPRCILCMKDFSTRKTLKRHIKKFHD 641
+L +++ K+ RC LC K+F T +L H+++ D
Sbjct: 109 DLARTDVEGKI--RCCLCGKEFQTMHSLFGHMRRHPD 143
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 29.5 bits (63), Expect = 5.9
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 108 CDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVR 251
C C K F K + R H + + G K + C C + FK KRSL+ HV+
Sbjct: 264 CRMCGKAFAVKGDWRTHEK--NCG-KLWYC-SCGSDFKHKRSLKDHVK 307
>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 267
Score = 29.5 bits (63), Expect = 5.9
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +3
Query: 99 WSKCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKHPNSVLF 278
W +C+ C+K FKS + + H +H + K E + L ++ +K T +
Sbjct: 159 WFECETCEKVFKSYQALGGH-RASH----KKKIAETDQLGSDELKKKKKKSTSSHH---- 209
Query: 279 PECHICHKRFESAKSCKIHLKLLHSFN 359
EC IC K F S ++ H + S N
Sbjct: 210 -ECPICAKVFTSGQALGGHKRSHASAN 235
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 29.1 bits (62), Expect = 7.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 87 NNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLF 218
++ +W +CD C S + H + LG Y C C T F
Sbjct: 427 DSQSWVRCDGCKVWIHSACDQISHKHFKDLGETDYYCPTCRTKF 470
>At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 402
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 456 IYKCEECNLVFKGQENFEQHNEQCHVNLLPNIK 554
+++CEEC F+ ++ F+ H H L PN K
Sbjct: 63 LFRCEECGKGFRYEKYFKNHRSMMH--LSPNEK 93
>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 238
Score = 29.1 bits (62), Expect = 7.8
Identities = 27/116 (23%), Positives = 40/116 (34%)
Frame = +3
Query: 105 KCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKHPNSVLFPE 284
KC CDK F S + + H + + L + SV
Sbjct: 90 KCSVCDKAFSSYQALGGHKASHRKSFSLTQSAGGDELSTSSAITTSGISGGGGGSVKSHV 149
Query: 285 CHICHKRFESAKSCKIHLKLLHSFNMNTHPCGLCTISFSSNEALTIHLQTKHLAED 452
C ICHK F + ++ H K H N ++S S + T H+ + H D
Sbjct: 150 CSICHKSFATGQALGGH-KRCHYEGKNGGGVS-SSVSNSEDVGSTSHVSSGHRGFD 203
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 29.1 bits (62), Expect = 7.8
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +3
Query: 414 LTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQHNEQCHVNLLPNIKQKVLPRCILCMKD 593
L H + KH + + C +C F + ++ H + C L CI C D
Sbjct: 288 LQTHYKRKHGIKP--FMCRKCGKAFAVRGDWRTHEKNCGK----------LWYCI-CGSD 334
Query: 594 FSTRKTLKRHIKKF---HDCFEVD 656
F +++LK HIK F H + +D
Sbjct: 335 FKHKRSLKDHIKAFGNGHGAYGID 358
Score = 29.1 bits (62), Expect = 7.8
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 108 CDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVR 251
C C K F + + R H + + G K + CI C + FK KRSL+ H++
Sbjct: 303 CRKCGKAFAVRGDWRTHEK--NCG-KLWYCI-CGSDFKHKRSLKDHIK 346
>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
identical to Cys2/His2-type zinc finger protein 2
[Arabidopsis thaliana] gi|6009885|dbj|BAA85107
Length = 273
Score = 29.1 bits (62), Expect = 7.8
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +3
Query: 105 KCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKHP--NSVLF 278
KC+ C+K F S + + H + +H +K I ++ KHP S
Sbjct: 107 KCNVCEKAFPSYQALGGH-KASHR-IKPPTVISTTADDSTAPTISIVAGEKHPIAASGKI 164
Query: 279 PECHICHKRFESAKSCKIHLKLLHSFNM-NTHPCGLCTISFSSNEALTIHLQTKH 440
EC ICHK F + ++ H + + N+ G +IS S + + T+ + H
Sbjct: 165 HECSICHKVFPTGQALGGHKRCHYEGNLGGGGGGGSKSISHSGSVSSTVSEERSH 219
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 29.1 bits (62), Expect = 7.8
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Frame = +3
Query: 459 YKCEECNLVFKGQENFEQH-------------NEQCHVNLLPNIKQKVLPRCILCMKDFS 599
+KCE C VFK + H EQ + +K+K + C +C + F+
Sbjct: 194 FKCETCGKVFKSYQALGGHRASHKKNKACMTKTEQVETEYVLGVKEKKVHECPICFRVFT 253
Query: 600 TRKTLKRHIKKFH 638
+ + L H K+ H
Sbjct: 254 SGQALGGH-KRSH 265
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 252
Score = 29.1 bits (62), Expect = 7.8
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 90 NDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEK 227
++ W CD C+K F K + H+ K YKC C T K K
Sbjct: 208 DEFWICCDACEKWFHGKCVKITPAKAEHI--KHYKCPSCTTSKKMK 251
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 29.1 bits (62), Expect = 7.8
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 117 CDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVR 251
C+K F + + R H + + G K + C+ C + FK KRSL+ HVR
Sbjct: 192 CEKTFAVRGDWRTHEK--NCG-KLWFCV-CGSDFKHKRSLKDHVR 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,050,893
Number of Sequences: 28952
Number of extensions: 494620
Number of successful extensions: 1627
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3942184128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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