BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030723E4_A02_e297_02.seq (1405 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 27 6.2 >SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 851 Score = 27.1 bits (57), Expect = 6.2 Identities = 13/52 (25%), Positives = 23/52 (44%) Frame = +1 Query: 70 HEVYNITFIIFYLIS*EKAFHLKKNVNTLRWRFCLRLCTMSAAVCNFFFFYF 225 HE +++ + L+S + N + + F L LC + NF + YF Sbjct: 447 HEFFSLEDVQHILLSYGSDYFTNNGSNPVMYFFLLMLCGLYERAINFLYPYF 498 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 968,872 Number of Sequences: 5004 Number of extensions: 14252 Number of successful extensions: 31 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 31 length of database: 2,362,478 effective HSP length: 75 effective length of database: 1,987,178 effective search space used: 778973776 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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