Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A01_e289_01.seq
         (1463 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            27   1.8  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            27   1.8  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    25   4.2  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    24   9.6  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 955  GPSINXVKXFK-AXFDPTLPKSR*FFNTATNN 863
            GPS   VK  + A FD   P +   FNT TNN
Sbjct: 1107 GPSYRLVKTHRNATFDLIGPNNAVVFNTDTNN 1138


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 955  GPSINXVKXFK-AXFDPTLPKSR*FFNTATNN 863
            GPS   VK  + A FD   P +   FNT TNN
Sbjct: 1108 GPSYRLVKTHRNATFDLIGPNNAVVFNTDTNN 1139


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 669 SSSGTLRNTVRPI-GM*LKIVGNIDNVLVTNNARCPITQP 553
           +S G L N +  +    L +V N+D++L+  +AR P  QP
Sbjct: 618 TSIGLLENNLTMVVNGTLGLVSNMDHLLIPEDARGPRNQP 657


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 310 PFGSFGLSHTPLPPNDY 360
           P   FG +HT LPP  Y
Sbjct: 67  PTDGFGTTHTQLPPQFY 83


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,016,112
Number of Sequences: 2352
Number of extensions: 18669
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 170685900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)