Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A01_e289_01.seq
         (1463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff...    30   4.4  
At4g20760.1 68417.m03015 short-chain dehydrogenase/reductase (SD...    29   5.8  

>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
           effector-related similar to Endonuclease sen1
           (Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
           to tRNA-splicing endonuclease positive effector
           (Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
          Length = 1090

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 168 TGINRKSGQKCPTLTRLPAPTRSYAGELSHSDRSFDSPGT 287
           T ++R++  K P   R P    S + ++S+S RSF  P T
Sbjct: 184 TSVSRQASWKQPANIRQPKSGHSSSRKVSYSQRSFKKPAT 223


>At4g20760.1 68417.m03015 short-chain dehydrogenase/reductase (SDR)
           family protein contains Pfam profile: PF00106 short
           chain dehydrogenase
          Length = 298

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -1

Query: 800 CVILFKGKINTCDISQPFEPHVINGQFLIKHY 705
           C++L  G ++T D+S+PF+ +V +G+   + Y
Sbjct: 238 CILLHPGTVDT-DLSRPFQRNVPDGKLFTREY 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,633,094
Number of Sequences: 28952
Number of extensions: 386861
Number of successful extensions: 702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3884352576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)