Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H10_e176_16.seq
         (1488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   8.8  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   8.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = -1

Query: 348 APGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPP 178
           AP S P P   +   R P  A  R  +  P+P S   +     P      +P  +PP
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP------IPSSLPP 173


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 273 GVARPNPESLEVLHEPRRPRGPLDAL 196
           G   P+PE +E   EP   R PL+AL
Sbjct: 280 GALNPDPEVIEPEDEPTTFRNPLEAL 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,549
Number of Sequences: 5004
Number of extensions: 38199
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 830530906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)