Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_H10_e176_16.seq
(1488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0416 - 17399059-17399777,17400560-17400704 37 0.047
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 34 0.25
11_06_0610 - 25449085-25453284 32 1.3
03_05_0714 - 27076881-27077218,27077332-27077482,27077768-270779... 31 2.3
02_05_0554 + 29929860-29929959,29932944-29934220 31 2.3
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 31 3.1
10_01_0129 + 1535823-1537196 31 3.1
02_05_0100 - 25821606-25822349 31 3.1
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 30 4.1
03_06_0728 + 35768830-35769324,35769404-35769462,35770440-357705... 30 4.1
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 29 7.1
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 7.1
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 29 7.1
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 29 7.1
02_01_0016 + 110796-110979,111252-111768,111847-112213 29 7.1
11_02_0041 - 7669692-7670312 29 9.4
11_01_0066 - 536281-537196,537397-537452 29 9.4
07_03_1160 - 24430240-24431268 29 9.4
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 36.7 bits (81), Expect = 0.047
Identities = 31/106 (29%), Positives = 35/106 (33%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPR 175
P PG E G R P ARR R P + PRR GP + P R
Sbjct: 63 PFCVPCPPGRERGPKEERHPHHRARRKERKRTGPAPAMAMQPPRRKTGPAPTMT-TQPLR 121
Query: 174 SSTGESL*RPARSARLSCEPR**SRRIVAEPDCEVGGGSCXIPAVP 37
G L +PR RR+ VGGG A P
Sbjct: 122 IRIGRGEEEGRGRGELEVDPR---RRLGHTAATVVGGGGEGAAATP 164
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 34.3 bits (75), Expect = 0.25
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSP---GEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDM 184
P SD A E S SP G +R + P PE E P +PR A D
Sbjct: 195 PEGEASDAEENASEESPPSPPTRGRRRKRAATSDPPPEDDEEEGTPAQPRRRKRAATSDP 254
Query: 183 PPRSSTGESL*RPARSAR 130
PP E P R R
Sbjct: 255 PPEDDEEEGTPAPPRRRR 272
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPP 178
P + S P P A E SP E+ + P PES P P G + P PP
Sbjct: 621 PESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPP 679
Score = 29.1 bits (62), Expect = 9.4
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPP 178
P + S P P E SP ++ + P PES P P G + + P PP
Sbjct: 654 PESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPP 712
>03_05_0714 -
27076881-27077218,27077332-27077482,27077768-27077903,
27078309-27078457,27079141-27079267,27080033-27080172,
27080264-27080329,27080760-27080901,27081021-27081115,
27081640-27082140
Length = 614
Score = 31.1 bits (67), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 351 IAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRG 211
+APGS G +A GEA + GG A P+P + H P P G
Sbjct: 1 MAPGSSSTSSPGGKAAAVGGEAGKEGG-AVPSPAAAASDHAPVAPDG 46
>02_05_0554 + 29929860-29929959,29932944-29934220
Length = 458
Score = 31.1 bits (67), Expect = 2.3
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 237 LHEPRRPRGPLDALPGDMPPRSS-TGESL*RPARSARLSCEPR**SRRIVAEPDCEVGGG 61
LH PR P P +P D+P + T + + +ARL+ P + + A+ D + G
Sbjct: 47 LHHPRSPCSPAP-VPADLPFTAVLTHDDARISSLAARLAKTPSARATSLDADADAGLAGS 105
Query: 60 SCXIPAVPGXS 28
+P PG S
Sbjct: 106 LASVPLSPGAS 116
>12_02_0478 +
19514509-19514940,19515749-19515820,19515954-19515986,
19516169-19516830,19516905-19517045,19518634-19518830,
19518878-19518965,19518987-19519041,19519501-19519571,
19519709-19519763,19519881-19519896,19520286-19520361,
19521202-19521240,19521312-19521333
Length = 652
Score = 30.7 bits (66), Expect = 3.1
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = -1
Query: 390 TSDASSV*WRRLPIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRG 211
+S A + + +L I S P P P + EAAR GGVAR P +L V P G
Sbjct: 62 SSAAGATSFTQLLIGNLSAPPPPPPPPQQQQQREAARGGGVARAGP-ALSVAPPP--TAG 118
Query: 210 PLDALPGDMPP 178
+ +P + P
Sbjct: 119 SVFTVPPGLSP 129
>10_01_0129 + 1535823-1537196
Length = 457
Score = 30.7 bits (66), Expect = 3.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = -1
Query: 363 RRLPIAPGSDPG--PEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPG 190
RRL G G P P SP ++RR RP P P + R P D G
Sbjct: 7 RRLAAGGGGGGGGAPRGSPPGGGSPLNSSRRSS-RRPRPSGSSPTSSPGQIRSPPDDGDG 65
Query: 189 DMPP 178
PP
Sbjct: 66 QPPP 69
>02_05_0100 - 25821606-25822349
Length = 247
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 342 GSDPGPEAGEPSARSPGEAARRGGVARPNPE 250
GSD AG S R P AA GG A PE
Sbjct: 201 GSDATAPAGPSSGRQPSAAAHPGGAAHGQPE 231
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 345 PGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPL-DAL 196
P + G E+ PS P EA + PNP+ E ++ +P P+ DA+
Sbjct: 181 PETIHGTESVPPSTHPPAEAPSAAEIPAPNPKVEEAKNDDHQPDWPMPDAI 231
>03_06_0728 +
35768830-35769324,35769404-35769462,35770440-35770509,
35770626-35770748,35770836-35770964,35771268-35771717
Length = 441
Score = 30.3 bits (65), Expect = 4.1
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 342 GSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRG-PLDALP 193
G P PE EPSA+S + RR + + +E HE RR G P LP
Sbjct: 47 GKHPEPEVAEPSAKSRRDEPRR----KRKRDEVEAGHERRRLGGAPAPPLP 93
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 29.5 bits (63), Expect = 7.1
Identities = 21/58 (36%), Positives = 23/58 (39%)
Frame = -1
Query: 351 IAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPP 178
I+P GP+ PS G R V P L V P P GPL PG M P
Sbjct: 479 ISPTPQQGPKGSRPSRGLRG----RPNVRDPQRMGLPVPLMPPPPFGPLGLPPGPMQP 532
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 7.1
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 361 PPSHRRRIRCL--LHAFLDTRLFRPEVVQAADDEVQ-PRDNVERGRVLRVPGRRQRGGEA 531
P + R +CL L +L+ ++ +++ D+++ P D+ G +LR P R +R +
Sbjct: 944 PGARENRRQCLKVLRLWLERKIMPEGILRRYMDDIEVPNDDANTGFLLRRPSRAERSVDD 1003
Query: 532 P 534
P
Sbjct: 1004 P 1004
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 29.5 bits (63), Expect = 7.1
Identities = 21/57 (36%), Positives = 24/57 (42%)
Frame = -1
Query: 345 PGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPR 175
P P P P SPG A RGG A P ++ H P +LPG PPR
Sbjct: 195 PTPPPTPRGFPPPLPSPGAGAPRGGSATP---AMIPGHPGAFYPFPPPSLPGVGPPR 248
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 29.5 bits (63), Expect = 7.1
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -1
Query: 357 LPIAPGSDPGPEA--GEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDM 184
+P PGS P P+ G P + AA R G + P + V+ P P G A GD
Sbjct: 135 IPTMPGSSPTPDTIPGSPPTPAAAVAAPRSGASHP---PIYVI--PATPHG---AAQGD- 185
Query: 183 PPRSSTGESL*RPARSARLS 124
PPR S PA++A S
Sbjct: 186 PPRHGKKVS---PAKAAGFS 202
>02_01_0016 + 110796-110979,111252-111768,111847-112213
Length = 355
Score = 29.5 bits (63), Expect = 7.1
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = -1
Query: 357 LPIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPP 178
L +AP P P P SP A + R P L + P P P+D +P PP
Sbjct: 164 LALAPSPIPTPIIAPPPVSSP--APPLPPLWRRRPRRLPPIWRPTPPSLPVDTMPPPPPP 221
>11_02_0041 - 7669692-7670312
Length = 206
Score = 29.1 bits (62), Expect = 9.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 478 ERGRVLRVPGRRQRGGEAPRARGDR 552
E RVLRV G R+R G A G+R
Sbjct: 103 EASRVLRVSGERRRAGAAEEEEGER 127
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.1 bits (62), Expect = 9.4
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPR 175
P +P S P P P SP R P + V P PR + P PP
Sbjct: 224 PPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTATVRPPPPLPRATVTPTP-TTPPS 282
Query: 174 SST 166
++T
Sbjct: 283 TAT 285
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.1 bits (62), Expect = 9.4
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -1
Query: 345 PGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPP 178
P P P +P +P + P P+ L +EP RP P + D PP
Sbjct: 114 PDGPPLPNPNQPPQPNPNGPPKPDMPPMPKPDGLPNTYEPSRPDQPPQPI-SDGPP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,756,364
Number of Sequences: 37544
Number of extensions: 366950
Number of successful extensions: 1589
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4756864280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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