Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H10_e176_16.seq
         (1488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.0  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    32   1.4  
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                32   1.4  
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.1  
SB_41227| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8e-08)         30   4.1  
SB_21796| Best HMM Match : COLFI (HMM E-Value=0)                       29   7.2  

>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 354 PIAPGSDPGPEAGEPSARSPGEAA-RRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPP 178
           P  P ++  P+  +   RS  + A RRG V +   +  EV+   R P     A  G + P
Sbjct: 48  PAKPNANKIPKERKRVDRSNSDVATRRGSVDKRKAKDKEVIPRRRTPTKNHSAENGAVSP 107

Query: 177 RSSTGE 160
           RSST E
Sbjct: 108 RSSTSE 113


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = -1

Query: 354  PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDAL--PGDMP 181
            P  PG + GP         PG     G  + P+P        P+ P GP   L  PGD  
Sbjct: 859  PGPPGIN-GPPGQVGEMGPPGLPGPPGPASPPSPPGPPGPPGPKGPPGPNGCLGPPGDAG 917

Query: 180  PRSSTGESL*RPARSARLSCE 118
            P  +TG +  +PA     +CE
Sbjct: 918  PAGNTGGAGCQPAPPCPPACE 938


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
 Frame = -1

Query: 327 PEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRR----PRGPLDALPGDMPPRSSTG 163
           P+   P  R P +  R      P     +  H PR     PRGP D  P +  PRS  G
Sbjct: 362 PDDRGPQDRPPWDGPREQDFRGPRDPRAQPAHNPRPGPQDPRGPQDRRPPNEQPRSQEG 420


>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -1

Query: 327 PEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPRSSTGESL*R 148
           P A +P+A+SP ++ RR    R + +SL    + R P  P + LP ++ PR     SL R
Sbjct: 104 PAAKKPAAKSPQQSPRRSRQRRRH-QSLP-RKQQRNPL-PKNLLPKNLLPRKLQNPSLQR 160

Query: 147 --PARSARLSCEPR 112
             P R+ R    PR
Sbjct: 161 SQPPRNLRRKPPPR 174


>SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 349 DRQAPPSHR--RRIRCLLHAFLDTRLFRPEVVQAADDEVQPRDNVERGRVLRVPGRRQRG 522
           +++  P+H    R+RCL+   L+ + F    V+   +E   R      R +R     QRG
Sbjct: 18  NKRIAPAHACFSRLRCLIETTLEIKTFETTAVRPLTNETSARQRQADKRHIRSKKTTQRG 77

Query: 523 GE 528
            E
Sbjct: 78  SE 79


>SB_41227| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8e-08)
          Length = 450

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -1

Query: 348 APGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPRSS 169
           +P  D    +G+ ++ S   A+  G +A P+ +      +   P G + +  GDM   S 
Sbjct: 59  SPSGDMASPSGDMASPSGDMASPSGDMASPSGDMASPSGDMASPSGDMASPSGDMASASG 118

Query: 168 TGESL 154
            GE++
Sbjct: 119 AGEAI 123


>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
          Length = 1239

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -1

Query: 345 PGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPL--DALPGDMPPRS 172
           P  +PG E GEP    PG A  +G   +P P  L     P    GP+    +PG    + 
Sbjct: 198 PPGEPG-ERGEPG--EPGAAGAKGAKGQPGPPGLVGEPGPEGEPGPVGPTGVPGLPGVKG 254

Query: 171 STGE 160
             GE
Sbjct: 255 DRGE 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,503,858
Number of Sequences: 59808
Number of extensions: 376592
Number of successful extensions: 1072
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4812488570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)