Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_H10_e176_16.seq
(1488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 72 9e-13
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 32 0.91
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 32 0.91
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 31 1.6
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 31 1.6
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 31 1.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 2.1
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 2.1
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 2.1
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 30 3.7
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 30 3.7
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 4.8
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 4.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 4.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 4.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 4.8
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 6.4
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 6.4
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 29 6.4
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 29 8.5
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 8.5
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 8.5
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 29 8.5
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 72.1 bits (169), Expect = 9e-13
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = +2
Query: 431 RLYKQPTTKSNRGIMLNAVEYCVFPGAVNAEAKRRVLEEIARSESKHFLVLFXDXGCQFR 610
+LY + TKSNRG++ NA+++ VFPGAVN ++ + ++A S SKHFL+LF D CQ+R
Sbjct: 990 KLYAKTVTKSNRGLINNALQFSVFPGAVNNATRQATITQMASSSSKHFLILFRDQKCQYR 1049
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 32.3 bits (70), Expect = 0.91
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = -1
Query: 360 RLPIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMP 181
R P P D G + + +PGE G A P P+ H P+ P +A PGD
Sbjct: 155 RGPPGPAGDGGRDGADGVDGTPGEIGPPGPPAPPGPDP----HSLFPPQCPCEAPPGDGG 210
Query: 180 PRSSTG 163
P G
Sbjct: 211 PPGQPG 216
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 32.3 bits (70), Expect = 0.91
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = -1
Query: 360 RLPIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMP 181
R P P D G + + +PGE G A P P+ H P+ P +A PGD
Sbjct: 136 RGPPGPAGDGGRDGADGVDGTPGEIGPPGPPAPPGPDP----HSLFPPQCPCEAPPGDGG 191
Query: 180 PRSSTG 163
P G
Sbjct: 192 PPGQPG 197
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 351 IAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRG 211
+ G PGP+ G P + PG + +G +P ++ P RP G
Sbjct: 229 VGRGGPPGPDGGYPMSGEPGSSGPQGKAGQPGGPGVD--GHPGRPGG 273
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 31.5 bits (68), Expect = 1.6
Identities = 25/74 (33%), Positives = 33/74 (44%)
Frame = -1
Query: 345 PGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPRSST 166
P PGP G P A PG+ G RP ++ L PR P GP PG+
Sbjct: 153 PQGPPGPP-GPPGA--PGDPGEAGTPGRPGTDATPGLPGPRGPPGP----PGEAGQPGPQ 205
Query: 165 GESL*RPARSARLS 124
G++ PA+S L+
Sbjct: 206 GDA-GTPAQSEPLT 218
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 31.5 bits (68), Expect = 1.6
Identities = 25/74 (33%), Positives = 33/74 (44%)
Frame = -1
Query: 345 PGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPRSST 166
P PGP G P A PG+ G RP ++ L PR P GP PG+
Sbjct: 153 PQGPPGPP-GPPGA--PGDPGEAGTPGRPGTDATPGLPGPRGPPGP----PGEAGQPGPQ 205
Query: 165 GESL*RPARSARLS 124
G++ PA+S L+
Sbjct: 206 GDA-GTPAQSEPLT 218
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 31.1 bits (67), Expect = 2.1
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = -1
Query: 345 PGSDPG-PEAGEP-SARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPRS 172
P +PG P EP + +PGE G P P P P GP A PG P
Sbjct: 197 PAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGA-PGPDGPPG 255
Query: 171 STGES 157
+ G+S
Sbjct: 256 ADGQS 260
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARP-NPESLEVLHEPRRPRGPLDALPGDMPP 178
P P P P G P +P EA GG P +P P P P A P PP
Sbjct: 184 PFGPSGAP-PSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 242
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 31.1 bits (67), Expect = 2.1
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = -1
Query: 345 PGSDPG-PEAGEP-SARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPRS 172
P +PG P EP + +PGE G P P P P GP A PG P
Sbjct: 197 PAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGA-PGPDGPPG 255
Query: 171 STGES 157
+ G+S
Sbjct: 256 ADGQS 260
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = -1
Query: 333 PGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGP-LDALPGDMPPRSSTG 163
PGP G G+A R G RP P EP P PG PR TG
Sbjct: 173 PGPVGGPGEQGPQGDAGRPGAAGRPGPAGPR--GEPGTEYKPGQPGRPGPQGPRGETG 228
Score = 29.1 bits (62), Expect = 8.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSAR-SPGEAARRGGVARPNP 253
P P + GP AG P A + GEA + G RP P
Sbjct: 220 PQGPRGETGP-AGNPGAPGNDGEAGKNGNAGRPGP 253
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = -1
Query: 333 PGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGP-LDALPGDMPPRSSTG 163
PGP G G+A R G RP P EP P PG PR TG
Sbjct: 167 PGPVGGPGEQGPQGDAGRPGAAGRPGPAGPR--GEPGTEYKPGQPGRPGPQGPRGETG 222
Score = 29.1 bits (62), Expect = 8.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSAR-SPGEAARRGGVARPNP 253
P P + GP AG P A + GEA + G RP P
Sbjct: 214 PQGPRGETGP-AGNPGAPGNDGEAGKNGNAGRPGP 247
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 4.8
Identities = 23/84 (27%), Positives = 33/84 (39%)
Frame = -1
Query: 363 RRLPIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDM 184
RR P A S P P+ + ++SP RR ++ + PRR R P +
Sbjct: 412 RRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPA------PRRRRSPSKSPQAPR 465
Query: 183 PPRSSTGESL*RPARSARLSCEPR 112
RS +G P R + PR
Sbjct: 466 RRRSPSGSKSRSPRRRRSPAAAPR 489
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.9 bits (64), Expect = 4.8
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = -1
Query: 345 PGSDPG-PEAGEP-SARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPP 178
P +PG P EP + +PGE G P P P P GP A D PP
Sbjct: 202 PAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPP 259
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 4.8
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRG--PLDALP---- 193
P A GS P P G P G P P P PRG P +LP
Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 317
Query: 192 GDMPPRSSTG 163
G PP + TG
Sbjct: 318 GGSPPPAGTG 327
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 4.8
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRG--PLDALP---- 193
P A GS P P G P G P P P PRG P +LP
Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 338
Query: 192 GDMPPRSSTG 163
G PP + TG
Sbjct: 339 GGSPPPAGTG 348
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 4.8
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRG--PLDALP---- 193
P A GS P P G P G P P P PRG P +LP
Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 323
Query: 192 GDMPPRSSTG 163
G PP + TG
Sbjct: 324 GGSPPPAGTG 333
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -1
Query: 354 PIAPGSDPGPE--AGEPSARSP-GEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDM 184
P +PG +PGP+ AG P P G GG P + + + GP +
Sbjct: 217 PGSPG-EPGPDGRAGHPGRNGPPGPPGDNGGQGEPGKDGEDGENGAAGAAGPKGSCDHCP 275
Query: 183 PPRSSTG 163
PPR++ G
Sbjct: 276 PPRTAPG 282
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -1
Query: 354 PIAPGSDPGPE--AGEPSARSP-GEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDM 184
P +PG +PGP+ AG P P G GG P + + + GP +
Sbjct: 217 PGSPG-EPGPDGRAGHPGRNGPPGPPGDNGGQGEPGKDGEDGENGAAGAAGPKGSCDHCP 275
Query: 183 PPRSSTG 163
PPR++ G
Sbjct: 276 PPRTAPG 282
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEP-SARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPG 190
P P + GP AG+P S + GE+ + G RP P + RG DA PG
Sbjct: 221 PPGPRGEAGP-AGQPGSPGNDGESGKPGNAGRPGPPGAPGKNGTPGVRGE-DAAPG 274
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 29.5 bits (63), Expect = 6.4
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -1
Query: 333 PGP--EAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGP 208
PGP EAG S G +G RP P + P P+GP
Sbjct: 236 PGPRGEAGLDGGNSEGPQGPQGDAGRPGPVGEQGPQGPEGPQGP 279
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 29.1 bits (62), Expect = 8.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSP 295
P+ P ++P PEA EP+A P
Sbjct: 228 PVEPEAEPEPEAAEPAAEEP 247
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPR 175
P P P A A++P A A+ E+ ++ E P P + P PP
Sbjct: 375 PPPPAPPPPAPAVPEEAQAPTPAPEEAPEAQIPAETAQIPPENAVPEAPEEPAPTTTPPP 434
Query: 174 SSTGES 157
S GE+
Sbjct: 435 ISAGEA 440
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMPPR 175
P P P A A++P A A+ E+ ++ E P P + P PP
Sbjct: 387 PPPPAPPPPAPAVPEEAQAPTPAPEEAPEAQIPAETAQIPPENAVPEAPEEPAPTTTPPP 446
Query: 174 SSTGES 157
S GE+
Sbjct: 447 ISAGEA 452
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 29.1 bits (62), Expect = 8.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 354 PIAPGSDPGPEAGEPSARSP 295
P+ P ++P PEA EP+A P
Sbjct: 228 PVEPEAEPEPEAAEPAAEEP 247
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,186,340
Number of Sequences: 27780
Number of extensions: 265425
Number of successful extensions: 1214
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4277144658
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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