Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H10_e176_16.seq
         (1488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    30   3.4  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    30   3.4  

>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = -1

Query: 333 PGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMP 181
           P P  G    + P     +G   RP P        PR P GP DAL  D P
Sbjct: 391 PAPPPGSGGPKPPPPPGPKG--PRPPPPMSLGPKAPRPPSGPADALDDDAP 439



 Score = 29.1 bits (62), Expect = 7.8
 Identities = 22/110 (20%), Positives = 36/110 (32%)
 Frame = -1

Query: 621 STAXRNWHPXSXNSTRKCLLSERAISSSTRRFASALTAPGNTQYSTAFNIIPRLDFVVGC 442
           ST   N H    +  ++C      +  +   F        +++     N       ++ C
Sbjct: 50  STGQVNEHMEETSWAQRCWQDSDCVKEAVAEFNLCFPGSKDSRELFGLNHTNLKQTLLDC 109

Query: 441 LYNLGPE*SSIXECVEETSDASSV*WRRLPIAPGSDPGPEAGEPSARSPG 292
           +   G       + +E  S    +  R L   PGS P P    P  RS G
Sbjct: 110 IQEKGKLNGHNPKYLELLSSMLDIPRRNLATKPGSSPSPSPSRPPKRSRG 159


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = -1

Query: 333 PGPEAGEPSARSPGEAARRGGVARPNPESLEVLHEPRRPRGPLDALPGDMP 181
           P P  G    + P     +G   RP P        PR P GP DAL  D P
Sbjct: 391 PAPPPGSGGPKPPPPPGPKG--PRPPPPMSLGPKAPRPPSGPADALDDDAP 439



 Score = 29.1 bits (62), Expect = 7.8
 Identities = 22/110 (20%), Positives = 36/110 (32%)
 Frame = -1

Query: 621 STAXRNWHPXSXNSTRKCLLSERAISSSTRRFASALTAPGNTQYSTAFNIIPRLDFVVGC 442
           ST   N H    +  ++C      +  +   F        +++     N       ++ C
Sbjct: 50  STGQVNEHMEETSWAQRCWQDSDCVKEAVAEFNLCFPGSKDSRELFGLNHTNLKQTLLDC 109

Query: 441 LYNLGPE*SSIXECVEETSDASSV*WRRLPIAPGSDPGPEAGEPSARSPG 292
           +   G       + +E  S    +  R L   PGS P P    P  RS G
Sbjct: 110 IQEKGKLNGHNPKYLELLSSMLDIPRRNLATKPGSSPSPSPSRPPKRSRG 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,565
Number of Sequences: 28952
Number of extensions: 233766
Number of successful extensions: 671
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3961461312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)