Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H09_e168_15.seq
         (1513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)             244   1e-64
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       33   0.79 
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          31   1.8  
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.8  
SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.4  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 29   7.4  
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)                   29   7.4  
SB_12735| Best HMM Match : PT (HMM E-Value=0.36)                       29   7.4  
SB_8303| Best HMM Match : START (HMM E-Value=0.0093)                   29   7.4  
SB_34252| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.7  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score =  244 bits (598), Expect = 1e-64
 Identities = 125/153 (81%), Positives = 136/153 (88%)
 Frame = +2

Query: 230 ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 409
           + P Y  FFGVMGA +A++FS+LGAAYGTAKSGTGIAAM+VMRPE IMKSIIPVVMAGII
Sbjct: 5   DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 410 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 589
           AIYGLVVAVLI  S+   S +YTLYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTA
Sbjct: 65  AIYGLVVAVLIGSSI---SKDYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTA 121

Query: 590 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 688
           QQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 122 QQPRLFVGMILILIFAEVLGLYGLIVALILTTK 154


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 32.7 bits (71), Expect = 0.79
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -2

Query: 651 RPNTSAKMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTARPAPK*MNPL 484
           +P T+ K R    PT +L      +   +PT   AKP     +PT RP  K   PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190


>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = +1

Query: 268  GGVCHHLQLPWCCIWHSQVRHRYCRHGGDAA*ADHEIHH----SRCHGGYHCHLRTGRSC 435
            GGVC +    + C+  +    + C    D     +  HH    S  HGGY C   +G + 
Sbjct: 1204 GGVCKNEHGGYSCVCKAGFTGKNCEQDVDECAGVNPCHHGGVCSNSHGGYSCKCASGYTG 1263

Query: 436  PDC 444
             +C
Sbjct: 1264 KNC 1266


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 624 IRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 502
           ++I+P N +     PR P + T P   P   P  PT  P P
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245


>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 503 GAGLAVGFSGLAAGFAIGIVG 565
           GAG+ VGF  LA G  +G+VG
Sbjct: 46  GAGMTVGFCNLACGICVGLVG 66


>SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 442 NQDSYDQSVDGNDTRHDNGND 380
           N DS D   +GND+  DNGND
Sbjct: 5   NDDSVDSDTNGNDSVSDNGND 25


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -2

Query: 585  VPRTPAS-PTMPMAKPAARPEKPTARPAP 502
            +P TP   P  P   P  RP  PT RP P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGP 1382


>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1155

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 576  TPASPTMPMAKPAARPEKPTARPAPK*MNPL 484
            TPA PT+PMA   A  + P+  PA     PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125


>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
          Length = 233

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 612 PTNNLGCWAVPRTPASP--TMPMAKPAARPEKPTARPAP 502
           P+NN G  A P TPA+P   M +A P+      T  P P
Sbjct: 87  PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125


>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
          Length = 1148

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 442 NQDSYDQSVDGNDTRHDNGNDGFHDLLRPHHRHG 341
           N+D+ DQS D +D    +  D  H+L +    HG
Sbjct: 537 NKDAVDQSKDKDDVTQPDDTDDVHELPKDEEDHG 570


>SB_8303| Best HMM Match : START (HMM E-Value=0.0093)
          Length = 522

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 195 TCKYSHIQEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMAQPSQAPVL 338
           T +  H + K  +I+  D SL L  RR+PSSS+     M+ P + P +
Sbjct: 467 TLRKYHCEHKDDEIEEEDSSLSLEKRRMPSSSS----EMSSPDRKPYM 510


>SB_34252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 442 NQDSYDQSVDGNDTRHDNGNDGFHD 368
           N D  D   D ND  HDN +D  H+
Sbjct: 3   NDDDDDNDNDNNDDNHDNNDDNDHN 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,228,825
Number of Sequences: 59808
Number of extensions: 865433
Number of successful extensions: 2579
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2544
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)