Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H09_e168_15.seq
         (1513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   279   3e-77
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   9.1  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  279 bits (685), Expect = 3e-77
 Identities = 139/153 (90%), Positives = 147/153 (96%)
 Frame = +2

Query: 230 ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 409
           ++PIY PFFGVMGAASAIIFS+LGAAYGTAKSGTGIAAM+VMRPE IMKSIIPVVMAGII
Sbjct: 5   DHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 410 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 589
           AIYGLVVAVLIAG L++P   YTL+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA
Sbjct: 65  AIYGLVVAVLIAGGLEEPKG-YTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 590 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 688
           QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 156


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 640 GIGSIRAHRRHLPVHEAVNQPEHT 711
           G+G    + RHLP H  + +P +T
Sbjct: 203 GLGVQNGYGRHLPGHAQMGRPSYT 226


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 602 LFVGMI-LILIFAEVLGLYGLIVAIY 676
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,274
Number of Sequences: 438
Number of extensions: 8654
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52874250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)