Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H08_e160_16.seq
         (1509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910     30   4.1  
11_01_0523 - 4109070-4109984,4110532-4110936                           30   5.5  
03_05_0155 - 21307001-21307239,21308217-21308320,21308564-213087...    29   9.6  
03_05_0088 + 20664580-20664696,20664796-20665218,20665297-206655...    29   9.6  
01_02_0132 + 11444480-11444609,11444698-11445131,11445210-114454...    29   9.6  

>06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910
          Length = 421

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 63  AGNSARGLQLMNLLNQIRLLSIVTAQ*IKSVCVYLCTHVRNYTS 194
           A   ++ +Q +  LNQ+R LS++T    K  C  LC  +   TS
Sbjct: 154 AVTDSKAIQELGELNQLRKLSVMTKGSNKKKCKILCAAIEKLTS 197


>11_01_0523 - 4109070-4109984,4110532-4110936
          Length = 439

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 344 WVSYCRDGCACIVKIYSHNFSLXRQK 421
           W ++CRDG A +V++  H+ +L R +
Sbjct: 167 WAAFCRDGDAAVVELPCHDRALLRAR 192


>03_05_0155 -
           21307001-21307239,21308217-21308320,21308564-21308772,
           21308773-21308838,21308933-21308997,21309716-21309942,
           21310156-21310269,21310515-21310522,21310964-21311053,
           21311167-21311359,21312934-21313024,21313364-21313496,
           21314756-21314896,21315017-21315078,21315159-21315246,
           21315523-21315952,21316067-21316173
          Length = 788

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 128 CYSTINKKCLCVLMYARKKLYFFGETIEK 214
           C + +NKK   V  Y    L F+GET++K
Sbjct: 269 CLNRLNKKAAEVQSYEENSLSFWGETLDK 297


>03_05_0088 +
           20664580-20664696,20664796-20665218,20665297-20665518,
           20665597-20666058,20666140-20666300,20666422-20666973,
           20667056-20667125,20667141-20667226,20667306-20667673,
           20668002-20668018
          Length = 825

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 431 SYTSFGAXGKNYESKFLRCTRNRPGNTTPRS*LVNIRGARNCH 303
           ++   G   KN++SK      N PGN TP      I  ARN H
Sbjct: 142 AFQKMGKAWKNWKSKLFTEFVNPPGNHTPFDEYSQITEARNEH 184


>01_02_0132 +
           11444480-11444609,11444698-11445131,11445210-11445431,
           11445510-11445971,11446053-11446885,11446968-11447138,
           11447218-11447518
          Length = 850

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 431 SYTSFGAXGKNYESKFLRCTRNRPGNTTPRS*LVNIRGARNCH 303
           ++   G   KN++SK      N PGN TP      I  ARN H
Sbjct: 150 AFQKMGKAWKNWKSKLFTEYVNPPGNHTPFDEYPQITEARNEH 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,800,088
Number of Sequences: 37544
Number of extensions: 531047
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)