Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H08_e160_16.seq
         (1509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)                     32   1.4  
SB_554| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   5.5  
SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)        29   9.7  

>SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)
          Length = 571

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -3

Query: 634 INSTVSMYSYIQLQENNSQYLINK-QXIIDNLQYIIDYNSFV 512
           INST  + +  Q   N++Q++I+  Q +ID+ Q++ID   FV
Sbjct: 400 INSTQFVINSTQFVINSTQFVIDSTQFVIDSTQFVIDSTHFV 441



 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 634 INSTVSMYSYIQLQENNSQYLINK-QXIIDNLQYIIDYNSFV 512
           I ST  + +  Q   N++Q++IN  Q +ID+ Q++ID   FV
Sbjct: 393 IYSTHFVINSTQFVINSTQFVINSTQFVIDSTQFVIDSTQFV 434


>SB_554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -3

Query: 634 INSTVSMYSYIQLQENNSQYLINK-QXIIDNLQYIIDYNSFV 512
           INST  + +  Q   +++Q++I+  Q +ID+ Q++ID   FV
Sbjct: 7   INSTHFVINSTQFVIDSTQFVIDSTQFVIDSTQFVIDSTQFV 48



 Score = 29.9 bits (64), Expect = 5.5
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 634 INSTVSMYSYIQLQENNSQYLINK-QXIIDNLQYIIDYNSFV 512
           INST  +    Q   +++Q++I+  Q +ID+ Q++ID   FV
Sbjct: 14  INSTQFVIDSTQFVIDSTQFVIDSTQFVIDSTQFVIDSTQFV 55


>SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)
          Length = 372

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 CLCVLMYARKKLYFFGETIEKPKTLIANLRVSFFRDGARALYVD*LTSGCRDSC 313
           C C ++ AR    F+  T++KP  L    +V+ F D  R  Y D ++    ++C
Sbjct: 322 CRCHVVKAR----FWVNTLQKPYQLTETFQVAKFDDNVRQFYCDGISRRPNNNC 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,649,419
Number of Sequences: 59808
Number of extensions: 599672
Number of successful extensions: 850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4894653009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)