Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H08_e160_16.seq
         (1509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    27   0.42 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    27   0.42 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    27   0.42 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    27   0.42 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    25   1.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   3.9  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   9.1  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   9.1  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   9.1  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   9.1  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   9.1  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   9.1  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   9.1  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   9.1  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   9.1  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   9.1  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   9.1  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 0.42
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 622 VSMYSYIQLQENNSQYLINKQXIIDNLQYIIDYNSFVPAALPVFH 488
           +S  S   +  NN +Y  N       L Y I+Y   +P  +PV++
Sbjct: 82  ISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYY 126


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 0.42
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 622 VSMYSYIQLQENNSQYLINKQXIIDNLQYIIDYNSFVPAALPVFH 488
           +S  S   +  NN +Y  N       L Y I+Y   +P  +PV++
Sbjct: 82  ISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYY 126


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 0.42
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 622 VSMYSYIQLQENNSQYLINKQXIIDNLQYIIDYNSFVPAALPVFH 488
           +S  S   +  NN +Y  N       L Y I+Y   +P  +PV++
Sbjct: 82  ISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYY 126


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 0.42
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 622 VSMYSYIQLQENNSQYLINKQXIIDNLQYIIDYNSFVPAALPVFH 488
           +S  S   +  NN +Y  N       L Y I+Y   +P  +PV++
Sbjct: 82  ISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYY 126


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 589 NNSQYLINKQXIIDNLQYIIDYNSFVPAALPVFH 488
           NN+ Y  N       L Y I+Y   +P  +PV++
Sbjct: 92  NNNNYKYNYNNNCKKLYYNINYIEQIPIPVPVYY 125


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 589 NNSQYLINKQXIIDNLQYIIDYNSFVPAALPV 494
           NN+ Y  N       L Y I+Y   VP  +PV
Sbjct: 92  NNNNYNNNNYNNYKKLYYNINYIEQVPVPIPV 123


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 92  YNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 325 YNYNNNYNNYNKHNYNKLYYNINYIEQI 352


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 YSHNFSLXRQKKYNFKKLFSN-DYLKAI 469
           Y++N +     K+N+ KL+ N +Y++ I
Sbjct: 325 YNYNNNYNNYNKHNYNKLYYNINYIEQI 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,336
Number of Sequences: 438
Number of extensions: 6409
Number of successful extensions: 30
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52754625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)