BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_H07_e152_15.seq (1498 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 6.7 SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 8.8 >SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1297 Score = 27.1 bits (57), Expect = 6.7 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 Query: 512 NKKIKNMCIIQSYVLPDGKNVL 577 ++ + +C+ QSY+ DGKN L Sbjct: 409 SRDVNRICMFQSYISQDGKNQL 430 >SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccharomyces pombe|chr 2|||Manual Length = 884 Score = 26.6 bits (56), Expect = 8.8 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -3 Query: 251 NILTLFSKLRNRNELIVKAGSFIPLTNSNHL 159 N LFSK+ N N+ + G +P ++HL Sbjct: 303 NFYQLFSKIDNENKGYIVGGEAVPFFMASHL 333 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,388,546 Number of Sequences: 5004 Number of extensions: 71969 Number of successful extensions: 115 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 115 length of database: 2,362,478 effective HSP length: 76 effective length of database: 1,982,174 effective search space used: 836477428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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