BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_H07_e152_15.seq (1498 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8 SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.5 SB_22558| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.5 >SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 405 Score = 31.5 bits (68), Expect = 1.8 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Frame = +2 Query: 1322 GKKGWRXXPXWPXKKXXEPRPRPXXXXX-PXEQTSPGXXGXEGPGXTPPXRGXXPPXGSR 1498 G++G R P P E P P P E +PG G GP P +G SR Sbjct: 306 GEEGGRGRPGKPGADGPEGLPGPAGDDGRPGENGAPGSRGNSGPAGFPGAKGKVVSTCSR 365 >SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 610 Score = 29.9 bits (64), Expect = 5.5 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Frame = +2 Query: 1091 IPXGPXIPTXYXWXCXRXXPPGPTX-XAPTXPGNPKV 1198 +P GP +PT P GPT PT P P V Sbjct: 469 VPSGPAVPTGPTVPSGPTVPSGPTVPSGPTVPSGPTV 505 >SB_22558| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 271 Score = 29.9 bits (64), Expect = 5.5 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 1129 PXVXGRNGGAXRNPPNRFEGRGPFXGEXP 1043 P + GRNGG R R G+GP + P Sbjct: 216 PPIRGRNGGVHRRKRGRPSGQGPTASDGP 244 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 32,579,537 Number of Sequences: 59808 Number of extensions: 541762 Number of successful extensions: 786 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 709 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 780 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4847701901 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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