Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H07_e152_15.seq
         (1498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   5.5  
SB_22558| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.5  

>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = +2

Query: 1322 GKKGWRXXPXWPXKKXXEPRPRPXXXXX-PXEQTSPGXXGXEGPGXTPPXRGXXPPXGSR 1498
            G++G R  P  P     E  P P      P E  +PG  G  GP   P  +G      SR
Sbjct: 306  GEEGGRGRPGKPGADGPEGLPGPAGDDGRPGENGAPGSRGNSGPAGFPGAKGKVVSTCSR 365


>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +2

Query: 1091 IPXGPXIPTXYXWXCXRXXPPGPTX-XAPTXPGNPKV 1198
            +P GP +PT          P GPT    PT P  P V
Sbjct: 469  VPSGPAVPTGPTVPSGPTVPSGPTVPSGPTVPSGPTV 505


>SB_22558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 1129 PXVXGRNGGAXRNPPNRFEGRGPFXGEXP 1043
            P + GRNGG  R    R  G+GP   + P
Sbjct: 216  PPIRGRNGGVHRRKRGRPSGQGPTASDGP 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,579,537
Number of Sequences: 59808
Number of extensions: 541762
Number of successful extensions: 786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4847701901
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)