Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H07_e152_15.seq
         (1498 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    28   0.61 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    27   1.4  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    24   9.9  

>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 632  YK-LCNYCEIIINNYFVYSSAKIL*SNRWSLYYFLITKLNQIYIKKKLSPFLDFF 793
            YK + NY + +   +F Y  A+      W+  YF   K NQ  I  +L+P+ D++
Sbjct: 1556 YKDVSNYAKNLTYQFFDY--ARYFTFPYWNEDYFFQGKHNQFQIDFQLAPYFDYY 1608


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
            chain precursor protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +2

Query: 1304 GLXXXRGKKGWRXXPXWPXKKXXEPRPRPXXXXXPXEQTSPGXXGXEGPGXTPPXRGXXP 1483
            G+   +G++G+   P  P      P  R      P E  +PG  G  GP   P   G   
Sbjct: 586  GMKGDKGERGYAGEPGRPGASGV-PGER-GYPGMPGEDGTPGLRGEPGPKGEPGLLGPPG 643

Query: 1484 PXG 1492
            P G
Sbjct: 644  PSG 646


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
 Frame = -3

Query: 734 LKNNIVTIYLITIFSHYYRRNNYLLLFHNNYIIYTLYTHLVIT*ESK*FCIFIIHFSRPV 555
           + N I+ + ++TI+  Y+ +    +  H   I+      L++T  S   C+ +++ S+  
Sbjct: 276 ITNGILAL-MVTIYLVYFAQQLPAISGHTPLIVIFFSNTLLLTAFSTIICVIVMNLSKAK 334

Query: 554 THSS------ELYTCFLSFCSVQVKKYNYED 480
              S       L  C   F  V  K +++ D
Sbjct: 335 HQQSLPGLLKRLAGCVGPFVGVGKKHFSFSD 365


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,261
Number of Sequences: 2352
Number of extensions: 19237
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 175156245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)