Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H07_e152_15.seq
         (1498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    31   2.1  
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    31   2.8  
AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine r...    30   3.7  
U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine rec...    29   6.5  

>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical protein
            C15A11.6 protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 19/63 (30%), Positives = 20/63 (31%)
 Frame = +2

Query: 1304 GLXXXRGKKGWRXXPXWPXKKXXEPRPRPXXXXXPXEQTSPGXXGXEGPGXTPPXRGXXP 1483
            G     G+ G    P  P K     R  P     P  Q  PG  G  G G  P   G   
Sbjct: 178  GSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAPGSQGPPGAPGQPGSGNAPGPAGPPG 237

Query: 1484 PXG 1492
            P G
Sbjct: 238  PAG 240


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical protein
            C15A11.5 protein.
          Length = 316

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 19/63 (30%), Positives = 20/63 (31%)
 Frame = +2

Query: 1304 GLXXXRGKKGWRXXPXWPXKKXXEPRPRPXXXXXPXEQTSPGXXGXEGPGXTPPXRGXXP 1483
            G     G+ G    P  P K     R  P     P  Q  PG  G  G G  P   G   
Sbjct: 178  GSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAPGPQGPPGAPGQPGSGNAPGPAGPPG 237

Query: 1484 PXG 1492
            P G
Sbjct: 238  PAG 240


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical protein
            C09G5.5 protein.
          Length = 317

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 18/57 (31%), Positives = 20/57 (35%)
 Frame = +2

Query: 1322 GKKGWRXXPXWPXKKXXEPRPRPXXXXXPXEQTSPGXXGXEGPGXTPPXRGXXPPXG 1492
            G+ G    P  P +     R  P     P  Q  PG  G  G G TP   G   P G
Sbjct: 182  GQAGAPGNPGRPGQSGQRSRGLPGPSGRPGPQGPPGAPGQPGSGSTPGPAGPPGPPG 238


>AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 8 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 725 NIVTIYLITIFSHYYRRNNYLLLFHNNYIIYTLYTHLVIT*ESK*FCIFIIHFSRPVTHS 546
           +++ + ++ I SH+  ++    LFH N II     HL        F  FI  FSR + H 
Sbjct: 31  SLIALPVVVIASHWLSKSRNAKLFHINVII-IFQIHL--------FGFFIHFFSRIILHG 81

Query: 545 SELYT-CFLSFCSV 507
            +LY      +C +
Sbjct: 82  LDLYNYAVFDYCDM 95


>U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 22 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -3

Query: 725 NIVTIYLITIFSHYYRRNNYLLLFHNNYIIYTLYTHLVIT*ESK*FCIFIIHFSRPVTHS 546
           +++ + ++ I SH+  ++    LFH N II     HL        F  FI  FSR + H 
Sbjct: 31  SLIALPVVVIASHWLWKSRNARLFHINVII-IFQVHL--------FGFFIHFFSRIILHG 81

Query: 545 SELY 534
            +LY
Sbjct: 82  LDLY 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,757,264
Number of Sequences: 27780
Number of extensions: 445673
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4308364692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)