Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H07_e152_15.seq
         (1498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    25   1.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   9.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   9.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   9.0  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 692 SHYYRRNNYLLLFHN-NYI 639
           ++YY  NNY  L++N NYI
Sbjct: 315 NNYYNNNNYKKLYYNINYI 333


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 692 SHYYRRNNYLLLFHNNY 642
           ++ Y  NNY  L+ NNY
Sbjct: 88  NYNYNNNNYKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 692 SHYYRRNNYLLLFHNNY 642
           ++ Y  NNY  L+ NNY
Sbjct: 88  NYNYNNNNYKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 692 SHYYRRNNYLLLFHNNY 642
           ++ Y  NNY  L+ NNY
Sbjct: 88  NYNYNNNNYKKLYCNNY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 326,206
Number of Sequences: 438
Number of extensions: 6210
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52276125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)