Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H07_e152_15.seq
         (1498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60250.1 68414.m06785 zinc finger (B-box type) family protein...    30   3.4  

>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
           contains similarity to zinc finger protein GI:3618320
           from [Oryza sativa]
          Length = 251

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 620 EYIRYKLCNYCEIIINNYFVYSSAKIL*SNRWSLYYFLITKLNQIYI 760
           E++RY+LC+ C +  +  F Y    +L  + +S +Y   T  +Q  +
Sbjct: 40  EHVRYQLCDNCSMYPSILFCYEDGMVLCQSCYSHHYNCATNGHQTQV 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,903,824
Number of Sequences: 28952
Number of extensions: 375780
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3990377088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)