Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H04_e128_16.seq
         (1510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172           31   1.8  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    30   4.1  
01_06_0035 + 25782410-25783384,25784130-25784696                       30   5.5  
02_02_0572 + 11667455-11670783,11672026-11672419                       29   9.6  

>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
          Length = 618

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 247 KKDGCGHRSQKLSQGTRRFLRRLSTRPSGNCPHRIARLVRITTTIHILY 393
           + DGCG   Q  SQ   R    LS + +   P  + RLV IT  +HI+Y
Sbjct: 543 QNDGCGTSPQAESQSQDRKSVELSVKGAKKGP--MFRLVNITDDLHIIY 589


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 18/49 (36%), Positives = 31/49 (63%)
 Frame = +3

Query: 528 KRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERL 674
           ++QL E+ L + + R +A     +LESLK TV+  + ++L  +QNN +L
Sbjct: 418 EKQLSEQKLQIENERKQAEMYKLELESLKATVVAEKEKILQ-EQNNLKL 465


>01_06_0035 + 25782410-25783384,25784130-25784696
          Length = 513

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = +1

Query: 208 VADLLRNTIRNTRKKDGCGHRSQKLSQGTRRFLRRLSTRPSG 333
           VA LLR+    T ++DG G+ SQKL  GT R   R S R  G
Sbjct: 434 VAKLLRDRKAGT-EEDGGGYVSQKLHAGTGRRHPRASRRGGG 474


>02_02_0572 + 11667455-11670783,11672026-11672419
          Length = 1240

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 398 GKQREQSRTFSRDFTGYQRKDCSRQAGRTCQR-KTRGCGFGRRVETPTS*EGF 553
           G+ R+Q R   RD  G +R+D  +  GR   R   R    GRR +     E F
Sbjct: 212 GRDRDQDRDHDRDREGERRRDRDKDRGRDIDRDMDRDHRRGRRYDDEEEPEQF 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,981,256
Number of Sequences: 37544
Number of extensions: 526936
Number of successful extensions: 1251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)