Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_H04_e128_16.seq
(1510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 33 0.45
SB_3183| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 32 1.4
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 31 1.8
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 31 1.8
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_35955| Best HMM Match : EMP24_GP25L (HMM E-Value=9.1) 31 3.2
SB_12482| Best HMM Match : TP2 (HMM E-Value=5.6) 29 9.7
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 9.7
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 29 9.7
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 33.5 bits (73), Expect = 0.45
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 516 VDELKRQLREKDLVLTDIRLEALSSAHQLESLKD--TVIKMRNE 641
VD +++L EK+ ++ +R E S Q+ESLK+ TVI+ NE
Sbjct: 1055 VDGHRKELMEKEYLIAQLRSEKASIERQVESLKNQITVIQSENE 1098
Score = 33.1 bits (72), Expect = 0.60
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 534 QLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNE 641
Q++EKDLV+ +R E +Q+ESL+ ++ +R E
Sbjct: 1169 QIKEKDLVIQQLRDEREQYENQIESLRQQIVVIREE 1204
Score = 29.5 bits (63), Expect = 7.3
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = +3
Query: 528 KRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNE 641
+++LREK+ ++ +R E +S Q+ESL+ + +++E
Sbjct: 761 RKELREKEYLIEKLRAEKSASDGQIESLRRQITYVQSE 798
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 519 DELKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNE 641
+ K+++REK+ + +R E + HQLE + + +++ E
Sbjct: 1110 ESYKQEVREKEYEIEKLRTERATFEHQLEGMTSQITRIKAE 1150
>SB_3183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 32.3 bits (70), Expect = 1.0
Identities = 30/97 (30%), Positives = 46/97 (47%)
Frame = -1
Query: 703 ASDLEVTSRCRRSLFCFKFSISFLILITVSFKLSS*CAELSASNRMSVKTKSFSRSWRFN 524
+S E +S S FS S TVS ++SS AE S+S+ S+ SFS S
Sbjct: 17 SSSAEASSSSVSSSVADSFSPSVAESSTVSAEVSSSSAEASSSSVSSLVADSFSSS---V 73
Query: 523 SSTKTASSGFSLACSSGLAGTVFSLVSGKVS*ECSRL 413
+ + T S+ S + + + +V SLV+ S R+
Sbjct: 74 AESSTVSAEVSSSSAEASSSSVSSLVADSFSSSVGRI 110
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 31.9 bits (69), Expect = 1.4
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 516 VDELKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQR 680
+ + +R +KD LT + +E + +LESLKD + +++ + N R+QR
Sbjct: 2387 ITKFQRDTFDKDNRLTTLEIEKIDIEKKLESLKDEYSGEKTKLVEAEGNLARVQR 2441
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 516 VDELKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQ 677
V LK QLRE+ L+ R E S + + L++ ++ NE+ +LK + R+Q
Sbjct: 447 VTGLKAQLREQVLISESNRREISSKQNLIVQLRERLVATENELDSLKGDITRVQ 500
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +3
Query: 528 KRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQR 680
+R+ EKD + +++ QLESLK + K+++E NLK+++ R Q+
Sbjct: 1337 ERESAEKDNLTDNLQASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQ 1387
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 31.5 bits (68), Expect = 1.8
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 540 REKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNER 671
REKD +L+D + E S ++SL VIK++ + ++QN+ +
Sbjct: 1579 REKDDILSDKQQEKQSLEATIQSLLKEVIKLKQQRKEMRQNHRQ 1622
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 31.1 bits (67), Expect = 2.4
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 525 LKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQRLV 686
L ++E + +L D+R E + LES + V+ EM NL ++N L LV
Sbjct: 1084 LAEHVQESERLLQDLRNEKENLRALLESKEQLVMSYSEEMKNLTKDNNELSVLV 1137
Score = 29.1 bits (62), Expect = 9.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 510 VLVDELKRQLREKDLVLTD---IRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQR 680
VLV+E + +L EKD LT+ + E + Q + + M ++ NL +NERL
Sbjct: 1135 VLVEEYQVKLHEKDKELTNLSHLEFEVDQLSRQSKDNDFSRHSMEEKIGNLSGDNERLST 1194
Query: 681 LVTSR 695
L+ R
Sbjct: 1195 LLEER 1199
>SB_35955| Best HMM Match : EMP24_GP25L (HMM E-Value=9.1)
Length = 308
Score = 30.7 bits (66), Expect = 3.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 718 HSVLAVLV*KTLEGL-V*PDQATMHXAVMDIHSQPLDLDFNCIASTPTIDFAKKGL 882
H V A ++ K L V P + +D+ PLD D++ + + PT+D K L
Sbjct: 243 HDVTAPMLDKGYYALDVTPPPLDKDYSALDVTPPPLDKDYSAVVTVPTLDKGKYAL 298
>SB_12482| Best HMM Match : TP2 (HMM E-Value=5.6)
Length = 406
Score = 29.1 bits (62), Expect = 9.7
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 311 G*ARVPRATVLTG*LVWFASLRRSTYYTGGKQREQSRTFSRDFTGY 448
G AR PRA LVW A RR+ Q F R+ +GY
Sbjct: 360 GFARDPRAKAFESVLVWTAGSRRTRLENESVDANQVMRFRRNESGY 405
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 516 VDELKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQ 677
+D L+++L EK+ + ++ QL+S+K +++ R++ +KQ+ R Q
Sbjct: 1480 MDLLRKELSEKEDSVGQLQAGKAYLEEQLQSMKVSLVLSRDDSEKIKQDQSRYQ 1533
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 29.1 bits (62), Expect = 9.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 510 VLVDELKRQLREKDLVLTD---IRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQR 680
VLV+E + +L EKD LT+ + E + Q + + M ++ NL +NERL
Sbjct: 1079 VLVEEYQVKLHEKDKELTNLSHLEFEVDQLSRQSKDNDFSRHSMEEKIGNLSGDNERLST 1138
Query: 681 LVTSR 695
L+ R
Sbjct: 1139 LLEER 1143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,472,898
Number of Sequences: 59808
Number of extensions: 593346
Number of successful extensions: 1451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4894653009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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