BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_H04_e128_16.seq (1510 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 33 0.65 At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r... 32 0.86 At5g54070.1 68418.m06731 heat shock transcription factor family ... 30 3.5 At3g23620.1 68416.m02971 brix domain-containing protein contains... 29 8.0 At2g29060.1 68415.m03532 scarecrow transcription factor family p... 29 8.0 >At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family protein Common family members: At4g18570, At4g04980, At5g61090 [Arabidopsis thaliana]; identical to cDNA CHUP1 for actin binding protein GI:28071264 Length = 1004 Score = 32.7 bits (71), Expect = 0.65 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +3 Query: 522 ELKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQRLV 686 EL+ + RE + L + ++ ES D V K+R E+ NLK NNE L + V Sbjct: 282 ELQHEKRELSIKLDSAEARIATLSNMTES--DKVAKVREEVNNLKHNNEDLLKQV 334 >At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 1094 Score = 32.3 bits (70), Expect = 0.86 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -1 Query: 331 PRDACLAVLEIFAFLEKAFVNDDRSHPFFLCFLSCCAEDPLLRLFMLETL 182 P D C IF L + N D FFL + C ED +L+ F +L Sbjct: 39 PSDLCFLQGHIFMALARKTENSDLKFAFFLASVECYLEDYMLQAFAAVSL 88 >At5g54070.1 68418.m06731 heat shock transcription factor family protein contains Pfam profile: PF00447 HSF-type DNA-binding domain Length = 331 Score = 30.3 bits (65), Expect = 3.5 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +3 Query: 513 LVDELKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQ-RLVT 689 L+ +KR R K+ + ++ ++ESLK+ MR EML LKQ E Q ++VT Sbjct: 154 LLKNIKR--RSKNTKCCNKEASTTTTETEVESLKEEQSPMRLEMLKLKQQQEESQHQMVT 211 >At3g23620.1 68416.m02971 brix domain-containing protein contains Pfam domain, PF04427: Brix domain Length = 314 Score = 29.1 bits (62), Expect = 8.0 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 346 RIARLVRITTTIHILYGREATRTV*NILTRLYRIPKKRLFPPSRKN 483 R +LV IL+G + + T+ +++T LYR+ K SR+N Sbjct: 19 RAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRYSRRN 64 >At2g29060.1 68415.m03532 scarecrow transcription factor family protein Length = 1336 Score = 29.1 bits (62), Expect = 8.0 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -1 Query: 358 DELSCEDSCPRDACLAVLEIF---AFLEKAFVNDDRSHPFFL 242 DE E++CPRDA L ++ F+ A VN + PFF+ Sbjct: 1173 DETGSEENCPRDAVLKLIRNMNPDVFIH-AIVNGSFNAPFFI 1213 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,652,089 Number of Sequences: 28952 Number of extensions: 411269 Number of successful extensions: 1071 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1027 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1071 length of database: 12,070,560 effective HSP length: 84 effective length of database: 9,638,592 effective search space used: 4028931456 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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