Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H04_e128_16.seq
         (1510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    33   0.65 
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r...    32   0.86 
At5g54070.1 68418.m06731 heat shock transcription factor family ...    30   3.5  
At3g23620.1 68416.m02971 brix domain-containing protein contains...    29   8.0  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    29   8.0  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +3

Query: 522 ELKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQRLV 686
           EL+ + RE  + L        + ++  ES  D V K+R E+ NLK NNE L + V
Sbjct: 282 ELQHEKRELSIKLDSAEARIATLSNMTES--DKVAKVREEVNNLKHNNEDLLKQV 334


>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 331 PRDACLAVLEIFAFLEKAFVNDDRSHPFFLCFLSCCAEDPLLRLFMLETL 182
           P D C     IF  L +   N D    FFL  + C  ED +L+ F   +L
Sbjct: 39  PSDLCFLQGHIFMALARKTENSDLKFAFFLASVECYLEDYMLQAFAAVSL 88


>At5g54070.1 68418.m06731 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 331

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 513 LVDELKRQLREKDLVLTDIRLEALSSAHQLESLKDTVIKMRNEMLNLKQNNERLQ-RLVT 689
           L+  +KR  R K+    +      ++  ++ESLK+    MR EML LKQ  E  Q ++VT
Sbjct: 154 LLKNIKR--RSKNTKCCNKEASTTTTETEVESLKEEQSPMRLEMLKLKQQQEESQHQMVT 211


>At3g23620.1 68416.m02971 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 314

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 346 RIARLVRITTTIHILYGREATRTV*NILTRLYRIPKKRLFPPSRKN 483
           R  +LV       IL+G + + T+ +++T LYR+ K      SR+N
Sbjct: 19  RAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRYSRRN 64


>At2g29060.1 68415.m03532 scarecrow transcription factor family
            protein 
          Length = 1336

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 358  DELSCEDSCPRDACLAVLEIF---AFLEKAFVNDDRSHPFFL 242
            DE   E++CPRDA L ++       F+  A VN   + PFF+
Sbjct: 1173 DETGSEENCPRDAVLKLIRNMNPDVFIH-AIVNGSFNAPFFI 1213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,652,089
Number of Sequences: 28952
Number of extensions: 411269
Number of successful extensions: 1071
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)