BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_H03_e120_15.seq (1518 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 197 3e-51 SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.32 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.55 SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 9.0 >SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces pombe|chr 1|||Manual Length = 195 Score = 197 bits (481), Expect = 3e-51 Identities = 96/175 (54%), Positives = 129/175 (73%), Gaps = 2/175 (1%) Frame = +3 Query: 78 TRSXTSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKI 251 T + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP P LKAF K Sbjct: 16 TETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKC 75 Query: 252 QIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVF 431 Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+VF Sbjct: 76 QARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVF 133 Query: 432 PAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 596 P EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP Sbjct: 134 PTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188 >SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 941 Score = 31.5 bits (68), Expect = 0.32 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 384 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 560 ++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621 Query: 561 KLTGREVTFEFP 596 + T +F+ P Sbjct: 622 QSTKSTASFQLP 633 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 30.7 bits (66), Expect = 0.55 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = +3 Query: 297 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 476 H V V D+ + P N+Q R +L+ + D + + V E V R K G Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650 Query: 477 SQLIKVHLD-KNQQTTIEHKV 536 S ++ LD K+ Q EHK+ Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671 >SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizosaccharomyces pombe|chr 1|||Manual Length = 678 Score = 26.6 bits (56), Expect = 9.0 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = +3 Query: 210 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 302 +++P K F+KI+ +VRE E+K +GK+V Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,872,788 Number of Sequences: 5004 Number of extensions: 91526 Number of successful extensions: 246 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 234 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 245 length of database: 2,362,478 effective HSP length: 76 effective length of database: 1,982,174 effective search space used: 850352646 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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