Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_H03_e120_15.seq
(1518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 179 6e-45
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 174 2e-43
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 75 1e-13
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.2
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 30 4.2
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 5.5
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 7.3
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 29 7.3
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 179 bits (435), Expect = 6e-45
Identities = 86/170 (50%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Frame = +3
Query: 93 SISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLV 266
S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP KAF+KI +RLV
Sbjct: 22 SVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHVRLV 81
Query: 267 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 446
RELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIV
Sbjct: 82 RELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIV 137
Query: 447 GKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 596
GKRIR +LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 138 GKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 174 bits (423), Expect = 2e-43
Identities = 86/167 (51%), Positives = 123/167 (73%), Gaps = 2/167 (1%)
Frame = +3
Query: 102 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 275
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 276 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 455
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 456 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 596
+R LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 74.9 bits (176), Expect = 1e-13
Identities = 42/98 (42%), Positives = 63/98 (64%)
Frame = +3
Query: 156 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 335
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 336 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 449
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 709 ITIHWPSFYNVV-TGKTLALPNLIALQH 789
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 370 FCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLI 254
F L A+ L L L +L T+ CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 426 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 533
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 7.3
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 375 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 491
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 29.5 bits (63), Expect = 7.3
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = -3
Query: 562 FLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 383
FL +D +CS + F+ C L E F L+ TI+ + MA+ T +
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516
Query: 382 ERGLFCLLATRVLWLGLG 329
GL+ +LA R+LWL +G
Sbjct: 517 --GLYTVLAPRILWLAIG 532
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,734,739
Number of Sequences: 37544
Number of extensions: 700415
Number of successful extensions: 1493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4872885360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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