Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H03_e120_15.seq
         (1518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri...   181   1e-45
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila...   181   1e-45
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila...   181   1e-45
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila...   177   2e-44
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila...   177   2e-44
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ...    30   3.5  

>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
           ribosomal protein S7 homolog - Brassica oleracea,
           EMBL:AF144752
          Length = 190

 Score =  181 bits (441), Expect = 1e-45
 Identities = 90/175 (51%), Positives = 129/175 (73%), Gaps = 2/175 (1%)
 Frame = +3

Query: 78  TRSXTSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKI 251
           T     ++QAL +LE TN +LK++L++LYI +A  +++  N+K+++IYVP    KAF+KI
Sbjct: 17  TECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKI 76

Query: 252 QIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVF 431
             RLVRELEKKFSGK V+FV  R+I+  P     V    +RPR+RTLTSV++A+LED+ F
Sbjct: 77  HPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAF 132

Query: 432 PAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 596
           PAEIVGKR R +LDGS+++KV LD  ++   E+K++T   VY+KLTG++V FE+P
Sbjct: 133 PAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187


>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score =  181 bits (440), Expect = 1e-45
 Identities = 88/175 (50%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
 Frame = +3

Query: 78  TRSXTSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKI 251
           T     ++QAL +LE TN +LK++L++LYI +A ++++  N+K+++IYVP    KAF+KI
Sbjct: 17  TEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKI 76

Query: 252 QIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVF 431
            +RLVRELEKKFSGK V+FV  R+I+  P   + V    +RPR+RTLTSV++A+LED+ +
Sbjct: 77  HLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAY 132

Query: 432 PAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 596
           PAEIVGKR R +LDG++++KV LD   +   E+K++T   VY+KLTG++V FE+P
Sbjct: 133 PAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187


>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score =  181 bits (440), Expect = 1e-45
 Identities = 88/175 (50%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
 Frame = +3

Query: 78  TRSXTSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKI 251
           T     ++QAL +LE TN +LK++L++LYI +A ++++  N+K+++IYVP    KAF+KI
Sbjct: 17  TEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKI 76

Query: 252 QIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVF 431
            +RLVRELEKKFSGK V+FV  R+I+  P   + V    +RPR+RTLTSV++A+LED+ +
Sbjct: 77  HLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAY 132

Query: 432 PAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 596
           PAEIVGKR R +LDG++++KV LD   +   E+K++T   VY+KLTG++V FE+P
Sbjct: 133 PAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187


>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
           to 40S ribosomal protein S7 homolog GI:5532505 from
           [Brassica oleracea]
          Length = 191

 Score =  177 bits (430), Expect = 2e-44
 Identities = 86/169 (50%), Positives = 128/169 (75%), Gaps = 2/169 (1%)
 Frame = +3

Query: 96  ISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVR 269
           ++QA  +LE TN +LK++L++LY+  A ++++   +K+I++ VP    KA++KI +RLVR
Sbjct: 23  VAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVR 82

Query: 270 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 449
           ELEKKFSGK V+ +  R+I+ +P  K   A   KRPR+RTLTSV++AIL+D+V PAEIVG
Sbjct: 83  ELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVG 138

Query: 450 KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 596
           KR R +LDG++++KV LD  ++   E+KV+ F +VYKKLTG++V FEFP
Sbjct: 139 KRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187


>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
           to 40S ribosomal protein S7 homolog GI:5532505 from
           [Brassica oleracea]
          Length = 191

 Score =  177 bits (430), Expect = 2e-44
 Identities = 86/169 (50%), Positives = 128/169 (75%), Gaps = 2/169 (1%)
 Frame = +3

Query: 96  ISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVR 269
           ++QA  +LE TN +LK++L++LY+  A ++++   +K+I++ VP    KA++KI +RLVR
Sbjct: 23  VAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVR 82

Query: 270 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 449
           ELEKKFSGK V+ +  R+I+ +P  K   A   KRPR+RTLTSV++AIL+D+V PAEIVG
Sbjct: 83  ELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVG 138

Query: 450 KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 596
           KR R +LDG++++KV LD  ++   E+KV+ F +VYKKLTG++V FEFP
Sbjct: 139 KRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187


>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
           profile PF02453: Reticulon
          Length = 457

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 447 QQSRPGIPDLPIWRHIQKSVSWNGAFSVCWL 355
           ++ R  I DL +WR + KS  W G   +C+L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,583,403
Number of Sequences: 28952
Number of extensions: 523138
Number of successful extensions: 1106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4057847232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)