Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H02_e112_16.seq
         (1494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...   121   2e-28
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    35   0.025
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    33   0.13 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    31   0.41 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   3.8  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   5.0  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score =  121 bits (292), Expect = 2e-28
 Identities = 54/110 (49%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
 Frame = +3

Query: 255 LPLAATMQEDEQSGCNVLEYQNQAKMLFRKLGPQSPMRCSIETGPYLFHYLIENEICYLV 434
           LPLAA++ +DE +  N+  ++ QAK++ ++L P S  R SIE+G Y FHYLI+N ICYL 
Sbjct: 7   LPLAASV-DDESTERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLC 65

Query: 435 LCERNYSKRLAFSYLEEIAQEFYQQYGKR-VNTVTRPYTFIEFDTWMQRT 581
           +CE++Y ++LAFSYLEE+A EF+  +G+  +    RPY F++FDT+MQ++
Sbjct: 66  ICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKS 115



 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +1

Query: 658 DVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYKKDATYLNTKSM 804
           DV R+M +NI+D+L RG  L ++   + +L   S KYKK A  +N +++
Sbjct: 137 DVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVNLEAL 185


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 658 DVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYKKDATYLNTK 798
           D   IM +NI  V +RG  L  L  KT NL++ +Q +++ A  +  K
Sbjct: 41  DTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKK 87


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 429 LVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFDTWMQR 578
           +V+   NY + +   YLE +  +FY  Y  R  +VT P      D  +QR
Sbjct: 165 MVIVNNNYLREVDMPYLESVESKFYVSYNAREISVTLPRLKTVGDMTIQR 214


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 812 FTSXDFVFRYVASFLYFXDIMDKFWVFVSNSDSIAPLCRTSSIFCIMI 669
           F S   +  Y+ +   F DIM   WV   +S ++ P+  T+++FC+ I
Sbjct: 187 FVSQLSIRNYLYNSTVFEDIMS--WVVAMSSSTMRPIRHTATVFCLNI 232


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -2

Query: 878  RIEPQKIKEQXXANXXXRPQVAFTSXDFVFRYVASFLYFXDIMDKFWVFVSNSDSI 711
            R+EP  +K+               S D  F Y+    Y  DI+   W+ +S  +S+
Sbjct: 1600 RVEPLLVKD-TFREFAEASVSGLLSCDESFHYLTQLYYTADIVRNLWILLSQRNSL 1654


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 719 QNWTQRPKTCP*CXKSI 769
           +NW +R +TCP C +S+
Sbjct: 338 RNWLERQQTCPICRRSV 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,760,457
Number of Sequences: 5004
Number of extensions: 65270
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)