Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_H02_e112_16.seq
(1494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 128 1e-29
03_06_0257 - 32697469-32697520,32698183-32698301,32698536-326985... 123 3e-28
08_02_0127 + 12840738-12840913,12841475-12841635,12842123-128422... 107 2e-23
06_01_0688 - 5022703-5022805,5023615-5023694,5024305-5024381,502... 58 1e-08
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 38 0.015
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 38 0.020
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 36 0.082
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 35 0.14
01_07_0284 - 42472309-42472359,42472778-42472864,42473384-424734... 34 0.25
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 33 0.58
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836... 32 1.3
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512... 31 2.3
11_06_0030 - 19415263-19415388,19415649-19415728,19416196-194162... 29 7.2
01_06_1457 + 37508187-37508421,37509012-37509109,37509791-375099... 29 9.5
01_05_0201 - 19225597-19225890,19227832-19228030,19228133-192283... 29 9.5
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 128 bits (308), Expect = 1e-29
Identities = 61/124 (49%), Positives = 84/124 (67%), Gaps = 2/124 (1%)
Frame = +3
Query: 216 MVLMTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKL--GPQSPMRCSIETGP 389
MV +TMIARV D LPL + +D + + Y+ QAK+LF+ L G R SIETGP
Sbjct: 1 MVKLTMIARVTDDLPLVEGL-DDGRDLKDADFYKQQAKLLFKNLSKGQHEASRMSIETGP 59
Query: 390 YLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFDTW 569
YLFHY+IE +CYL +C+ +Y K+LAF YLE++ EF + G ++ T RPY FI+FDT+
Sbjct: 60 YLFHYIIEGRVCYLTMCDCSYPKKLAFQYLEDLKNEFERVNGNQIETAARPYAFIKFDTF 119
Query: 570 MQRT 581
+Q+T
Sbjct: 120 IQKT 123
>03_06_0257 -
32697469-32697520,32698183-32698301,32698536-32698556,
32698903-32698979,32699331-32699477,32699561-32699721,
32700320-32700522
Length = 259
Score = 123 bits (297), Expect = 3e-28
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 7/129 (5%)
Frame = +3
Query: 216 MVLMTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKL--GPQSPMRCSIETGP 389
MV +TM+ARV DGLPLA + +D + + Y+ QAK+LF+ L G R SIETGP
Sbjct: 1 MVKLTMVARVTDGLPLAEGL-DDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGP 59
Query: 390 YLFHY-----LIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFI 554
Y F Y +IE +CYL +C+R+Y K+LAF YLE++ EF + G ++ T RPY FI
Sbjct: 60 YFFQYPYVLYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGSQIETAARPYAFI 119
Query: 555 EFDTWMQRT 581
+FDT++Q+T
Sbjct: 120 KFDTFIQKT 128
>08_02_0127 +
12840738-12840913,12841475-12841635,12842123-12842202,
12842435-12842550,12842570-12842705,12842738-12842872
Length = 267
Score = 107 bits (258), Expect = 2e-23
Identities = 55/122 (45%), Positives = 77/122 (63%), Gaps = 2/122 (1%)
Frame = +3
Query: 216 MVLMTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKL--GPQSPMRCSIETGP 389
MV +TMIARV DGLPL + +D + + Y+ QAK+LF+ L G R SIETGP
Sbjct: 1 MVKLTMIARVTDGLPLVEGL-DDGRDLKDADFYKQQAKLLFKNLSKGQHEASRMSIETGP 59
Query: 390 YLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFDTW 569
Y+ IE +CYL +C+ +Y K+LAF YLE++ EF + G ++ T RPY FI+F +
Sbjct: 60 YI----IEGRVCYLTMCDHSYPKKLAFQYLEDLKNEFERVNGNQIETAARPYAFIKFGPY 115
Query: 570 MQ 575
+Q
Sbjct: 116 LQ 117
>06_01_0688 -
5022703-5022805,5023615-5023694,5024305-5024381,
5024670-5024816,5025654-5025876
Length = 209
Score = 58.4 bits (135), Expect = 1e-08
Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +3
Query: 216 MVLMTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKL--GPQSPMRCSIETGP 389
MV +TMIARV DGLPLA + +D + + Y+ QAK+LF+ L G R SIETGP
Sbjct: 1 MVKLTMIARVTDGLPLAEGL-DDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGP 59
Query: 390 YLFHY 404
Y F Y
Sbjct: 60 YYFQY 64
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 38.3 bits (85), Expect = 0.015
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 658 DVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYKKDATYLNTK 798
+V+ +MMQNI+ VL RG + L KT++L +Q ++K T + K
Sbjct: 143 EVKGVMMQNIEKVLDRGEKIELLVDKTEDLRSQAQDFRKAGTKIRRK 189
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 37.9 bits (84), Expect = 0.020
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +3
Query: 324 AKMLFRKLGPQSPMRCSIETGPYLFHYL------IENEICYLVLCERNYSKRLAFSYLEE 485
A+ + KL P + R Y+FH L + + +L + + +R+ F YLE+
Sbjct: 29 ARRILEKLPPDAESRLCFAQDRYIFHVLRSPPPAAADGLTFLCMANDTFGRRIPFLYLED 88
Query: 486 IAQEFYQQYGK 518
I F + YG+
Sbjct: 89 IQMRFIKNYGR 99
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 35.9 bits (79), Expect = 0.082
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 658 DVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYKKDAT 783
+V+ +MM+NI+ VL RG + L KT+NL +Q +++ T
Sbjct: 140 EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQAGT 181
Score = 31.1 bits (67), Expect = 2.3
Identities = 11/54 (20%), Positives = 29/54 (53%)
Frame = +3
Query: 351 PQSPMRCSIETGPYLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQY 512
P S + + + F+YL+E+ Y V+ + +++ ++L+ + +F ++Y
Sbjct: 40 PASNNKFTYNCDGHTFNYLVEDGFTYCVVAVESVGRQIPIAFLDRVKDDFTKRY 93
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 35.1 bits (77), Expect = 0.14
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +3
Query: 348 GPQSPMRCSIETGPYLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYG 515
G +P R S + F++L+ Y V+ + + K ++ ++LE + +F ++YG
Sbjct: 65 GGGAPARFSYACDGHTFNFLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYG 120
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 697 LQRGAILSELDTKTQNLSMMSQKYKKDATYLNTKSML 807
L RG LSEL KT +L +Q++KK + K+ L
Sbjct: 204 LGRGEKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWL 240
>01_07_0284 -
42472309-42472359,42472778-42472864,42473384-42473449,
42474608-42474712,42475129-42475200,42475421-42475543
Length = 167
Score = 34.3 bits (75), Expect = 0.25
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +3
Query: 411 ENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTV----TRPYTFIE 557
+N +C + + +Y R AFS L + +E+++ +G+R T T+P+ +++
Sbjct: 41 DNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKTFGERWRTAKTDNTQPWQYLD 93
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 33.1 bits (72), Expect = 0.58
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 661 VQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYKKDA 780
V+ +M+ NID VL+RG L L KT N+ + ++K+ A
Sbjct: 138 VRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFKRQA 177
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 327 KMLFRKLGPQSPMRCSIETGPYLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQ 506
++L R G + S Y+FH + I L + + +R+ F++LE+I F +
Sbjct: 31 QVLERLPGGGADSHVSYTQDRYVFHAKRTDGITALCMADEAAGRRIPFAFLEDIHGRFVK 90
Query: 507 QYGKRVNT 530
YG+ T
Sbjct: 91 TYGRAALT 98
>02_05_1125 +
34282559-34282796,34283247-34283437,34283540-34283629,
34283630-34283793,34284139-34284352
Length = 298
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 661 VQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYKKDA 780
V+ +M+ NID VL+RG L L KT + + ++K+ A
Sbjct: 174 VRNVMIDNIDKVLERGDRLELLVDKTATMQGNTMRFKRQA 213
>07_01_0680 +
5128023-5128212,5128629-5128667,5129496-5129637,
5129727-5129847,5129951-5130013,5130114-5130203,
5130572-5130619,5131114-5131260
Length = 279
Score = 31.1 bits (67), Expect = 2.3
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 658 DVQRIMMQNIDDVLQRGAILSELDTKTQNL 747
+V+ +MM+NI+ VL RG + L KT+NL
Sbjct: 153 EVKGVMMENIEKVLDRGEKIELLVDKTENL 182
>11_06_0030 -
19415263-19415388,19415649-19415728,19416196-19416232,
19416338-19416460,19417195-19417242,19417335-19417378,
19417461-19417506,19417581-19417623,19418329-19418422,
19418503-19418604,19419936-19420014,19420698-19420964
Length = 362
Score = 29.5 bits (63), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 294 RSARLLAWSQPKAGRRRPAQSWSS 223
R+AR+L+ +P AGRRR A W +
Sbjct: 16 RAARMLSSGEPAAGRRRVAALWGN 39
>01_06_1457 +
37508187-37508421,37509012-37509109,37509791-37509904,
37510361-37510426,37510659-37510745,37510902-37511012
Length = 236
Score = 29.1 bits (62), Expect = 9.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 670 IMMQNIDDVLQRGAILSELDTKTQNLSMMSQK 765
I+ + I+ VLQRG L L K+ +LS SQK
Sbjct: 170 ILHKTIESVLQRGERLDSLVEKSSDLSAASQK 201
>01_05_0201 -
19225597-19225890,19227832-19228030,19228133-19228321,
19228475-19228785,19228899-19229030
Length = 374
Score = 29.1 bits (62), Expect = 9.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 452 QQETCIQLFRRNCSRILSAVREK-GEHSDAAVHI 550
Q TC++ F N S I S++R+K H+ VHI
Sbjct: 138 QSNTCLRSFPSNISEIKSSLRQKYASHNKINVHI 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,772,351
Number of Sequences: 37544
Number of extensions: 446559
Number of successful extensions: 1017
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4780068496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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