Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H02_e112_16.seq
         (1494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   2e-36
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)               140   2e-33
SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)                      41   0.003
SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)                          36   0.063

>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  151 bits (365), Expect = 2e-36
 Identities = 67/118 (56%), Positives = 92/118 (77%)
 Frame = +3

Query: 225 MTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKLGPQSPMRCSIETGPYLFHY 404
           MTMI R+ DGLPLAA+M  D+++   + +YQ+QAKMLFRKL   SP R SIE+G  +FHY
Sbjct: 1   MTMIGRLPDGLPLAASMPSDQETSQVLTQYQSQAKMLFRKLTNHSPARSSIESGNMMFHY 60

Query: 405 LIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFDTWMQR 578
           ++EN +C+L L ++ +SKR AFS+LE+IA EF ++YG +V+  TRPY FIEFDT+MQ+
Sbjct: 61  ILENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQVSRATRPYPFIEFDTYMQK 118



 Score = 40.7 bits (91), Expect(2) = 1e-08
 Identities = 19/32 (59%), Positives = 22/32 (68%)
 Frame = +1

Query: 718 SELDTKTQNLSMMSQKYKKDATYLNTKSMLVK 813
           S LD K  NL  +S+KYKKDATYLN +S   K
Sbjct: 201 SLLDDKAGNLRFVSEKYKKDATYLNLRSAYAK 232



 Score = 37.9 bits (84), Expect(2) = 1e-08
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +1

Query: 658 DVQRIMMQNIDDVLQRGAILS 720
           DVQR+M+QNIDDVLQRG  LS
Sbjct: 141 DVQRVMVQNIDDVLQRGEQLS 161


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score =  140 bits (340), Expect = 2e-33
 Identities = 63/112 (56%), Positives = 86/112 (76%)
 Frame = +3

Query: 225 MTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKLGPQSPMRCSIETGPYLFHY 404
           MTMI R+ DGLPLAA+M  D+++   + +YQ+QAKMLFRKL   SP R SIE+G  +FHY
Sbjct: 1   MTMIGRLPDGLPLAASMPSDQETSQVLTQYQSQAKMLFRKLTNHSPARSSIESGNMMFHY 60

Query: 405 LIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEF 560
           ++EN +C+L L ++ +SKR AFS+LE+IA EF ++YG +V+  TRPY FIEF
Sbjct: 61  ILENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQVSRATRPYPFIEF 112


>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
          Length = 295

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +3

Query: 312 YQNQAKMLFRKLGPQSPMRCSIETGPYLFHYLIENEICYLVLCERNYSKRLAFSYLEE-I 488
           +Q     +  K+ P +  +C+  +G Y FH ++E+ + YL + ++ + K+  +++LEE +
Sbjct: 126 FQQVTYTILEKI-PGNDTKCTYVSGSYQFHVIVEDGLVYLCMADKEFGKKDPYAFLEEAL 184

Query: 489 AQEFYQQYGKRVNTVTR 539
             +  +  G  +N V R
Sbjct: 185 YSDPGRAGGDAINKVQR 201


>SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)
          Length = 327

 Score = 36.3 bits (80), Expect = 0.063
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
 Frame = +3

Query: 324 AKMLFRKLGPQSPMRCSIETGPYL--FHYLIENEICYLVLCERNYSKRLAFSYLEEIA-Q 494
           A + FR+   + P  C   T P +  +H+ ++ +I  + L E + S+   FSY+E++A  
Sbjct: 67  ANVFFRRNDKEPP--CDGNTHPNMNPYHFRLKYDIYQMFLPEGDLSEDSLFSYMEKMAYP 124

Query: 495 EFYQQYGKRVNTVTRP-YTFIEFDT 566
              + YG +V+++  P    + FDT
Sbjct: 125 NVIKTYGTKVSSLQAPSLPLVSFDT 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,852,319
Number of Sequences: 59808
Number of extensions: 508736
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)