Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H02_e112_16.seq
         (1494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical pr...   123   4e-28
Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical pr...    29   6.4  

>U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical
           protein F55A4.1 protein.
          Length = 214

 Score =  123 bits (296), Expect = 4e-28
 Identities = 56/120 (46%), Positives = 85/120 (70%), Gaps = 2/120 (1%)
 Frame = +3

Query: 225 MTMIARVVDGLPLAATMQ--EDEQSGCNVLEYQNQAKMLFRKLGPQSPMRCSIETGPYLF 398
           +T+IARV DGL LA +++   D     ++++Y NQAKMLF+KL   +P + S+E+GP++F
Sbjct: 3   LTLIARVRDGLILATSIEGNNDGSGDSSMVKYSNQAKMLFKKLNG-APAQQSVESGPFVF 61

Query: 399 HYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFDTWMQR 578
           HY+I   IC LVLC+RN+ +++AF YL +I QEF  +   R+  V RPY F+EFD ++Q+
Sbjct: 62  HYIIVQNICALVLCDRNFPRKVAFQYLSDIGQEFLNENSSRIEQVVRPYHFLEFDKYIQQ 121



 Score = 55.6 bits (128), Expect = 9e-08
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = +1

Query: 658 DVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYKKDATYLNTKSMLVK--ATCGRX 831
           DV RIM+ NI+DV+ RG  L+ L+ +   LS MS+KY+ DA  LN +S + K  A+ G  
Sbjct: 143 DVTRIMVTNIEDVIHRGEALNILENRASELSGMSKKYRDDAKALNRRSTIFKVAASIGIA 202

Query: 832 XXLAXSCSFIFW 867
             L     FIF+
Sbjct: 203 GVLFLMLRFIFF 214


>Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical
           protein C50B6.11 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 154 FLLNLHRFFLLIISKLENSDDLTAASCRIXCXPGG 50
           FL+   + F+  I  L+N+  L++ SC + C P G
Sbjct: 4   FLVEAFKIFIFRIFSLQNNYFLSSISCFVVCGPAG 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,405,726
Number of Sequences: 27780
Number of extensions: 384925
Number of successful extensions: 974
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4297958014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)