Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_H01_e104_15.seq
         (1446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    29   1.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   3.7  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    28   3.7  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   8.5  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   8.5  

>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +3

Query: 312 YELAEKLNGPKGLPLIGNALEFVGGSAEI-----FSNIIQKSLAFDNESVVKIWIGPRLL 476
           +++++ LNG  G  L G   + VG    I     F+  +   LAF  + +V +WIG  + 
Sbjct: 357 FQISDSLNGTMGGALRGTGRQKVGAIVNITAYYLFALPLGIYLAFHGKGLVGLWIGQVIA 416

Query: 477 VFLYDPRDVEVILSS 521
           + +    ++++++++
Sbjct: 417 LSIVGILELKIVMAT 431


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +3

Query: 339 PKGLPLIGNALEFVGGSAEIF--SNIIQKSLAFDNESVVKIWIGPRLLVFLYDPRDVEVI 512
           P GLP      +F+  SAE+F  ++ + +S+  DN     I +GPR    + +  D+   
Sbjct: 182 PHGLPSFHLFPQFL--SAELFESASTVHRSVQCDNCLAHPI-VGPRFHCLVCEDYDLCSS 238

Query: 513 LSSHVHIDKADEYRFFKPWLGNGLLISTGQK 605
             SHVH D     R  +    + L +S  +K
Sbjct: 239 CVSHVHHDHHSMLRLTREISASPLHLSKPEK 269


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 160 RNKFFKKWVTLQLRMWCLATARSPLSTSFTYFSY 261
           RN  ++++ +L L  W + T    LS SF Y+ Y
Sbjct: 57  RNNVWRQFTSLFLITWIMGTLSYFLSASFAYYVY 90


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 126 DRCVNS*VFQLKE*ILQEMGYATAENVVPSNSTFSAINLFYVL 254
           D C+ +   +  E    +  Y  A N V SN   SAI+ F++L
Sbjct: 34  DTCIRNAFMEFMETRNSKSKYVEAFNTVQSNGATSAISTFHIL 76


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +3

Query: 411 IQKSLAF--DNESVVKIWIGPRLLVFLYDPRDVEVILSSHVHIDKADEYRFFKPWLGNGL 584
           +QK L F  D E V+  W G R LV   DP  V           +      F      GL
Sbjct: 382 LQKYLVFPVDREDVLSAWCGIRPLV--RDPSTVPPGTDPTTGETQGLVRSHFIFKSDTGL 439

Query: 585 LISTGQKWRSHRKLIAPT 638
           L  +G KW ++R++   T
Sbjct: 440 LTISGGKWTTYREMAEET 457


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 567 WLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVV 701
           W+GNG    T   + +  + I  T HL    S +D  + N+  V+
Sbjct: 67  WIGNGHAAETTLYFPASHQQIQLTLHLENQNSIVDSIHINADTVL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,715,116
Number of Sequences: 5004
Number of extensions: 90703
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 806794268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)