Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G09_e167_13.seq
         (1534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.2  

>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 13  LPRRFGGXLLATSWXXPGSAGNSARGSYLHYIYDYLK 123
           L + F G  +      P    NSARGS LH++YD L+
Sbjct: 49  LNKNFDGYSINPDSRYPNFNKNSARGSALHHLYDRLE 85


>SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 203 KRITTQNSL*KFKIWKKKYYSNLLH 277
           +R+T  NS+  FK+WK+ YY +  H
Sbjct: 295 RRLTVNNSILTFKLWKEAYYWDQSH 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,106,569
Number of Sequences: 59808
Number of extensions: 390929
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4988555225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)