Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G09_e167_13.seq
         (1534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z49067-3|CAA88852.3|  591|Caenorhabditis elegans Hypothetical pr...    29   8.7  
Z34799-8|CAA84319.3|  591|Caenorhabditis elegans Hypothetical pr...    29   8.7  

>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 344 RLLLITKYLQVHINITNKIILFHAINYCNIFSSK 243
           +++ I K LQ H+   +KII + A N+CN+F+ K
Sbjct: 359 KMMAIVKSLQKHLMNIHKIIDY-ADNFCNLFAMK 391


>Z49067-3|CAA88852.3|  591|Caenorhabditis elegans Hypothetical
           protein C44F1.1 protein.
          Length = 591

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -3

Query: 344 RLLLITKY---LQVHINITNKIILFHAI 270
           R  L T+Y   L+VH+NI NKII+ H++
Sbjct: 116 RRQLATRYAIQLEVHLNIDNKIIVVHSL 143


>Z34799-8|CAA84319.3|  591|Caenorhabditis elegans Hypothetical
           protein C44F1.1 protein.
          Length = 591

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -3

Query: 344 RLLLITKY---LQVHINITNKIILFHAI 270
           R  L T+Y   L+VH+NI NKII+ H++
Sbjct: 116 RRQLATRYAIQLEVHLNIDNKIIVVHSL 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,531,160
Number of Sequences: 27780
Number of extensions: 339830
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4411031650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)