Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G09_e167_13.seq
         (1534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   9.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   9.2  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -2

Query: 348 ISITSNH*VFTSSH*YH*QNNTVSCNKLL*YFFFQILNFQRL 223
           IS  SN+ +  +++ Y+  NN  + N      ++ I+N +++
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQI 122


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -2

Query: 348 ISITSNH*VFTSSH*YH*QNNTVSCNKLL*YFFFQILNFQRL 223
           IS  SN+ +  +++ Y+  NN  + N      ++ I+N +++
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQI 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,168
Number of Sequences: 438
Number of extensions: 4442
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53711625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)