Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G08_e159_14.seq
         (1516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0066 - 536281-537196,537397-537452                               30   5.5  
10_08_0211 + 15899017-15901392                                         29   9.6  

>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 1402 PMXXXGAPPPXXXGXNPXPS*TPXXXKXXRXPPP 1503
            P     +PPP      P PS TP   +    PPP
Sbjct: 223  PPPSPASPPPPSTATPPPPSPTPTTTRASPTPPP 256


>10_08_0211 + 15899017-15901392
          Length = 791

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 496 KPICLEVFGKFAQVCAKFSDLAPTSDGLRGCLELEPKLLGEGQLDF 633
           K +CL  F  +  +  +F DL+  SD +     L  K++G+G  DF
Sbjct: 238 KDMCLS-FALYRLLRCRFDDLSLPSDSVVNTRRLISKIIGKGNADF 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,356,464
Number of Sequences: 37544
Number of extensions: 576164
Number of successful extensions: 1154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)