Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G08_e159_14.seq
         (1516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2711| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   0.002
SB_54667| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.20 
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_45779| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   9.7  

>SB_2711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 490 NPKPICLEV-FGKFAQVCAKFSDLAPTSDGLRGCLELEPKLLGEGQLDFPIGCFKST 657
           NP PIC+ +      + C KFS+++   D   GC+ +  + LG  + DFP+GC  S+
Sbjct: 3   NPPPICVGIPHVDLLKACVKFSNISYNKDHFGGCISVGLEALG-FEKDFPLGCIYSS 58


>SB_54667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 523 KFAQVCAKFSDLAPTSDGLRGCLELEPKLLGEGQLDFPIGCFKSTPG 663
           KF+ VC KF+D++       GC+ L  KL    Q +F +GCF S  G
Sbjct: 18  KFS-VCIKFTDISYDKSNFGGCVSLVLKLT-LAQKEFMLGCFYSAEG 62


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 611 LGKDNLTSRSVVSNQHLEEWKWKIRPLNQNRQ 706
           LG +N  ++  VS  H+EEWK ++  LN N Q
Sbjct: 587 LGYEN-DAKQEVSINHVEEWKTRLEFLNNNAQ 617


>SB_45779| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 946

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 421 EEGFSVKVSYGKSLIHNSKINGTNPKPICLEVFGKFAQVCAKFSDLAPTS 570
           E+G    V+Y    +H+++ N  N   + LE+      VC KF +  PTS
Sbjct: 338 EDGKLRVVAYASRSLHSAERNMENYSSMKLELLALKWAVCEKFREQQPTS 387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,718,078
Number of Sequences: 59808
Number of extensions: 588616
Number of successful extensions: 1123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4918128563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)