Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G08_e159_14.seq
         (1516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    51   2e-06
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   6.5  

>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
 Frame = +1

Query: 292 LRDDQPNRN-CMCKGAACVCCVEFNITFVDLGGPGCVHMKYLSPEEGFSVKVSYGKSLIH 468
           LR    N N C C    C CC+E ++   +     CV+  Y     G  + +        
Sbjct: 128 LRTGSSNENGCACVHGNCACCLEISVP--EFRHSVCVNATYNPVSIGLDLSIGVDGHYF- 184

Query: 469 NSKINGTNPKPIC--LEVFGK--FAQVCAKFS--DLAPTSDGLRGCLELEPKLLGEGQLD 630
           + +I+  NP P+C  L + G    A VC  F+  DL      L GC++ E +L+    L 
Sbjct: 185 SEEISLRNPPPVCFSLPIPGAEHIAGVCVAFTKLDLDKKEKILSGCMDFEVELIHLRVLT 244

Query: 631 FPIGCFK 651
           F +GCF+
Sbjct: 245 FKLGCFR 251


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical protein
            C31C9.6 protein.
          Length = 965

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +1

Query: 1375 GXLXQXXXAPMXXXGAPPPXXXGXNPXPS*TPXXXKXXRXPPPXXP 1512
            G        P     APPP     NP PS  P        PPP  P
Sbjct: 451  GTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLP 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,271,875
Number of Sequences: 27780
Number of extensions: 472247
Number of successful extensions: 1017
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)