Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G07_e151_13.seq
         (1506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   1.7  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    28   2.9  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    28   2.9  

>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 21/58 (36%), Positives = 35/58 (60%)
 Frame = +3

Query: 168 APSLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 341
           AP  K L K+ N+L+S L+    SCL+D  T+ K ++       +EKTQ+ +FD +++
Sbjct: 13  APGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 773 WTNANGPIICRG--LTSSLKYGD 711
           W   NGP++C G   TS +K+ D
Sbjct: 490 WDGPNGPVVCHGHTFTSMIKFND 512


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +3

Query: 255 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQN 434
           D  EK V  S +    E+ QK++ D  E+ D  S+  T T  K+      +   EK HQ 
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187

Query: 435 LLEGVEHFDKT 467
            +EGV++  KT
Sbjct: 188 AVEGVQNSKKT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,459,813
Number of Sequences: 5004
Number of extensions: 82191
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 842423950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)