Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G07_e151_13.seq
         (1506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0203 + 12986685-12988691                                         33   0.59 
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654...    31   2.4  
01_06_0148 - 27007330-27008124                                         31   2.4  
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   5.5  
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812...    29   9.6  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    29   9.6  

>06_02_0203 + 12986685-12988691
          Length = 668

 Score = 33.1 bits (72), Expect = 0.59
 Identities = 24/90 (26%), Positives = 44/90 (48%)
 Frame = +3

Query: 237 SCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAA 416
           S L ++ T  + V+ + + + T    K   D  E    T+L   + +   P+P+ + +AA
Sbjct: 459 SLLLEISTRAEGVVAAVDALGTTAKFKKA-DHAEPPATTTL---DAEAAMPVPNSNAIAA 514

Query: 417 EKAHQNLLEGVEHFDKTQMKHTTTEEKNSL 506
           ++AH N   G EH  K   + TTT   +++
Sbjct: 515 DEAHGNATAG-EHDKKETAEQTTTTSASTV 543


>03_02_0985 - 12961787-12961984,12963177-12963337,12965332-12965489,
            12966015-12966105,12966715-12966752,12966994-12967154,
            12967249-12968687,12968815-12969227,12969630-12970987,
            12971089-12971454,12971533-12971696,12971748-12971820,
            12972967-12973113
          Length = 1588

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 255  DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQ-EKNPLPDKDVVAAEKAHQ 431
            D  EK    + +DVA  +  K    GIE  D +  K T  + E N L   D  +    ++
Sbjct: 927  DILEKTKRINDDDVAFHEKMKEHRAGIETLDLSGKKKTVKEWEDNRLSSMDHTSKGGDNE 986

Query: 432  NLLEGVEHFDKTQMKHTTTEEKNSL 506
            NL E +    K++ +    ++ N+L
Sbjct: 987  NLNERLSKIKKSEARPEEVQDANAL 1011


>01_06_0148 - 27007330-27008124
          Length = 264

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 374 PGEEPSA*QRCCRSGKGTSELTGRRRALRQNANEAHDDGREEFFTAN 514
           P   P++ +RC +SG   S L  RR + R     +H DG+E+F   N
Sbjct: 143 PSTTPASPRRCRKSGSTGSVLRWRRISERL-VRRSHSDGKEKFVFLN 188


>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 204 DLKSQLEGFNTSCLRDVDTNEKIVL 278
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>03_05_0070 -
           20478396-20478505,20478605-20478780,20481162-20481265,
           20481346-20481504,20481718-20481857,20482222-20482311,
           20482902-20482970,20484295-20484516,20486175-20486293,
           20486377-20486492,20488058-20488146,20488790-20488883
          Length = 495

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 180 KDLPKVANDLKSQLEGFNTSCLRDVDTNEKI 272
           K+L +  +DLKS+LEG+NT    D++  + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 180 KDLPKVANDLKSQLEGFNTSCLRDVDTNEKI 272
           K+L +  +DLKS+LEG+NT    D++  + +
Sbjct: 88  KELDERMHDLKSELEGYNTGDSDDINKKKAL 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,744,630
Number of Sequences: 37544
Number of extensions: 553844
Number of successful extensions: 1156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)