Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G07_e151_13.seq
         (1506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    80   5e-15
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 79.8 bits (188), Expect = 5e-15
 Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
 Frame = +3

Query: 174 SLKDLPKVANDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDA 350
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE FD+
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59

Query: 351 TSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXX 530
           T L  T  +EK  LP  D +  EK H  L + + +F    +K T T EKN L        
Sbjct: 60  TKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL----PSPT 115

Query: 531 XXXXNKFLNGIESFDPTKLKHTET 602
                K L    SFD + L H ET
Sbjct: 116 DVAREKTLQMAASFDKSALHHVET 139



 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 39/110 (35%), Positives = 56/110 (50%)
 Frame = +3

Query: 345 DATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXX 524
           +   LK  ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK  L      
Sbjct: 20  EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDI 79

Query: 525 XXXXXXNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQEKSA*ITSSY 674
                  +  + I +F    LK TET EKN LP+   + +EK+  + +S+
Sbjct: 80  KQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASF 129



 Score = 39.1 bits (87), Expect = 0.008
 Identities = 28/82 (34%), Positives = 37/82 (45%)
 Frame = +3

Query: 405 VVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTK 584
           V    K +Q L   V   +  ++K   T EKN L             + ++ IE FD TK
Sbjct: 4   VTELPKMNQELAGAVR--EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTK 61

Query: 585 LKHTETCEKNPLPTKDVIEQEK 650
           L  T   EK  LP+ D I+QEK
Sbjct: 62  LHSTPVKEKIVLPSADDIKQEK 83


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 450 EHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTETCEKN 614
           ++F+ T    TTT   NSL               L   E +DP+K++ +++  +N
Sbjct: 209 DYFNNTATTATTTTSSNSLNENNNSNKYGNKETVLQWSEPYDPSKIRRSQSPIRN 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,961,677
Number of Sequences: 27780
Number of extensions: 467713
Number of successful extensions: 978
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4339584726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)