Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G07_e151_13.seq
         (1506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    31   1.5  
At2g39710.1 68415.m04872 aspartyl protease family protein contai...    31   2.0  
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti...    30   3.4  
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor...    30   3.4  
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa...    29   6.0  
At3g11240.1 68416.m01367 arginine-tRNA-protein transferase, puta...    29   8.0  

>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +3

Query: 126 IFIPD*TMACSVGDAPSLKDLPKVANDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDV 296
           I I + T   S+ +  +  DLPK+ ++  SQ E     + S    +DT E ++ P+AED 
Sbjct: 68  IVIEEGTSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDT 127

Query: 297 ATEKTQKS 320
             E    S
Sbjct: 128 VEENIVSS 135


>At2g39710.1 68415.m04872 aspartyl protease family protein contains 
           profile Pfam PF00026: Eukaryotic aspartyl protease;
           contains Prosite PS00141: Eukaryotic and viral aspartyl
           proteases active site.;
          Length = 442

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 674 IRGSDSSGFLLLDDI-FSWEWILFASFSVLQLCRVEAFDAV 555
           I GSDSSGFLLL D  +SW   +  +  VLQ   +  FD V
Sbjct: 217 ISGSDSSGFLLLGDASYSWLGPIQYTPLVLQSTPLPYFDRV 257


>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein contains Pfam profile
           PF02493: MORN repeat
          Length = 871

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 303 EKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHT 482
           EK+ K + DG+EK+     K  E +++    + ++V AE     L E +E  D+   K  
Sbjct: 581 EKSVKPMLDGLEKWTEEKKKAYEERKEMIQQELELVEAEIC---LEEAIEDMDEELKKKE 637

Query: 483 TTEEKNS 503
             EEK +
Sbjct: 638 QEEEKKT 644


>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
           (CPK9) identical to calmodulin-domain protein kinase
           CDPK isoform 9 [Arabidopsis thaliana]
           gi|1399265|gb|AAB03242
          Length = 541

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 13/62 (20%), Positives = 29/62 (46%)
 Frame = +3

Query: 420 KAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTE 599
           ++++NL +  +HFDK    + T +E  S              + L+ ++S +  ++ + E
Sbjct: 464 ESNENLYKAFQHFDKDSSGYITIDELESALKEYGMGDDATIKEVLSDVDSDNDGRINYEE 523

Query: 600 TC 605
            C
Sbjct: 524 FC 525


>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
           family protein contains similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 486

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +2

Query: 368 RNPGEEPSA*QRCCRSGKGTSELTGRRRALRQNANEAHDDGREEFFTAN*SYRSRKREK* 547
           R+ G+E +   R  R   G+      R   +QNA+EAH+D   +    + + R R ++  
Sbjct: 242 RSLGKEAAVLMRSPRIASGSRRRRNSRNMEQQNASEAHEDDDND----DNNNRGRDKDSS 297

Query: 548 VPERHRKLRPDKAEAH*NLRKESTPN 625
             ER  ++R  K       R    P+
Sbjct: 298 SDERGTEVRQKKRRKRSTSRSTQHPS 323


>At3g11240.1 68416.m01367 arginine-tRNA-protein transferase,
           putative / arginyltransferase, putative /
           arginyl-tRNA-protein transferase, putative similar to
           SP|Q9ZT48 Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8) (R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1) {Arabidopsis
           thaliana}; contains Pfam profiles PF04377:
           Arginine-tRNA-protein transferase C terminus, PF04376:
           Arginine-tRNA-protein transferase N terminus
          Length = 605

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
 Frame = +3

Query: 183 DLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSA--EDVATEKTQKSLFDGIEKFDATS 356
           +L  +  DL  Q++     C++  +    + +P A  + V + K +K L +G E    TS
Sbjct: 155 ELEPIMKDLSEQIDNAVQKCIQSGEFPSNVQIPKASVKKVFSAK-RKKLAEGSEDLLYTS 213

Query: 357 ---------LKHTETQEKNPLPDKDVVAAEKAHQNLLEGV 449
                    +KHT+T EK    +++ ++ E   + LL  +
Sbjct: 214 NIAFPIVAAMKHTQTLEKGKNVEENRLSPEAVSEKLLSAM 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,594,163
Number of Sequences: 28952
Number of extensions: 435982
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4019292864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)