Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_G04_e127_14.seq
         (1506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    31   0.41 
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    30   0.72 
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    29   1.7  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   3.9  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   8.9  

>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 978 FGTFISRVLGRYANAQDQVKAMGKARFNCGRV 883
           F TF+SR+ G   + +DQ+KA    R N   V
Sbjct: 25  FTTFVSRIYGNSVDVEDQIKAFNTLRENAADV 56


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = -1

Query: 747 ITKELY*QMASKSNQVARVMQQHLDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALIN 568
           +T   Y Q+   SN +A  + ++  ++RGDVV V+     + V   +G+ K  A  ++I+
Sbjct: 310 VTSYTYRQIDESSNILAHHLVKN-GIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVID 368

Query: 567 SNLRHKPLLHCIQVAKAKAIV 505
                   +  + VAK +A+V
Sbjct: 369 PAYPPARQIIYLSVAKPRALV 389


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -1

Query: 678 LDLKRGDVVCVFMPNCGEYVWTWLGMAKLSAVSALINSNLRHKPLLHCIQVAKAKAIV 505
           L +K GD V + +PN  E+V  +  ++   A+   +NSN +       I   K+K ++
Sbjct: 47  LGIKVGDPVNIAIPNGLEFVVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLVI 104


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +1

Query: 52  PRXCRXFGTRQHSPPKFAEAVKALPVNSIS*VKKKSFIDAASSMNPLKTHISDYQSARVI 231
           P   R     Q   PK+ + ++ L   S    ++KSF  ++    P  +  SDYQ   ++
Sbjct: 666 PEDSRLLFAEQSRHPKYTDIIQKLKKPS----REKSFTSSSEYSLPFISPASDYQQNPLL 721

Query: 232 YSIKLRVDMNKR 267
           ++ K  V ++++
Sbjct: 722 HATKSLVSIHQQ 733


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 615 TWLGMAKLSAVSALINSNLRHKPLLHCIQVAKAK 514
           T  G+ +LSA++ +  S   H P++H + +   K
Sbjct: 75  TTFGVGELSAINGVAGSYAEHVPVVHIVGMPSTK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,621,903
Number of Sequences: 5004
Number of extensions: 86747
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 842423950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)